PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_93
Name: RGATAOS
Description: R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS

#Associated genes: 155
#Associated MapMan terms: 86

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	27 (17.42%)	1	2	3	8	6	2	1	4
27.3	RNA.regulation of transcription	26 (16.77%)	1	2	3	8	5	2	1	4
29	protein	15 (9.68%)	0	0	0	9	4	1	0	1
26	misc	9 (5.81%)	0	2	0	0	2	1	1	3
29.4	protein.postranslational modification	9 (5.81%)	0	0	0	5	2	1	0	1
30	signalling	9 (5.81%)	1	0	1	5	1	0	0	1
33	development	9 (5.81%)	0	0	0	3	0	2	1	3
31	cell	6 (3.87%)	0	1	0	0	2	1	0	2
31.1	cell.organisation	6 (3.87%)	0	1	0	0	2	1	0	2
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	5 (3.23%)	0	0	0	0	4	0	0	1
17	hormone metabolism	4 (2.58%)	0	2	0	0	1	0	0	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	4 (2.58%)	0	0	0	2	0	1	0	1
30.11	signalling.light	4 (2.58%)	1	0	1	1	0	0	0	1
33.99	development.unspecified	4 (2.58%)	0	0	0	1	0	1	0	2
17.2	hormone metabolism.auxin	3 (1.94%)	0	1	0	0	1	0	0	1
21	redox	3 (1.94%)	0	0	0	0	3	0	0	0
21.2	redox.ascorbate and glutathione	3 (1.94%)	0	0	0	0	3	0	0	0
28	DNA	3 (1.94%)	0	0	0	2	1	0	0	0
28.1	DNA.synthesis/chromatin structure	3 (1.94%)	0	0	0	2	1	0	0	0
29.4.1	protein.postranslational modification.kinase	3 (1.94%)	0	0	0	2	1	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	3 (1.94%)	0	0	0	2	1	0	0	0
29.5	protein.degradation	3 (1.94%)	0	0	0	2	1	0	0	0
30.2	signalling.receptor kinases	3 (1.94%)	0	0	0	3	0	0	0	0
33.3	development.squamosa promoter binding like (SPL)	3 (1.94%)	0	0	0	2	0	0	1	0
3	minor CHO metabolism	2 (1.29%)	0	0	0	1	0	0	0	1
16	secondary metabolism	2 (1.29%)	0	0	0	0	0	1	0	1
17.2.2	hormone metabolism.auxin.signal transduction	2 (1.29%)	0	1	0	0	0	0	0	1
26.16	misc.myrosinases-lectin-jacalin	2 (1.29%)	0	1	0	0	1	0	0	0
26.7	misc.oxidases - copper, flavone etc	2 (1.29%)	0	1	0	0	0	0	1	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	2 (1.29%)	0	0	0	0	0	1	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	2 (1.29%)	0	0	0	1	0	0	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (1.29%)	0	1	0	0	0	1	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	2 (1.29%)	0	0	0	2	0	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	2 (1.29%)	0	1	1	0	0	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	2 (1.29%)	0	0	0	1	1	0	0	0
29.3	protein.targeting	2 (1.29%)	0	0	0	2	0	0	0	0
29.3.4	protein.targeting.secretory pathway	2 (1.29%)	0	0	0	2	0	0	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (1.29%)	0	0	0	1	0	0	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (1.29%)	0	0	2	0	0	0	0	0
29.5.7	protein.degradation.metalloprotease	2 (1.29%)	0	0	0	2	0	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (1.29%)	0	0	0	2	0	0	0	0
33.30	development.multitarget	2 (1.29%)	0	0	0	0	0	1	0	1
33.30.1	development.multitarget.target of rapamycin	2 (1.29%)	0	0	0	0	0	1	0	1
13.1.3.4.12	amino acid metabolism.synthesis.aspartate family.methionine.homocysteine S-methyltransferase	1 (0.65%)	0	0	0	0	1	0	0	0
15	metal handling	1 (0.65%)	0	0	1	0	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.65%)	0	0	1	0	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.65%)	0	0	0	0	0	0	0	1
16.1.2	secondary metabolism.isoprenoids.mevalonate pathway	1 (0.65%)	0	0	0	0	0	0	0	1
16.1.2.9	secondary metabolism.isoprenoids.mevalonate pathway.farnesyl pyrophosphate synthetase	1 (0.65%)	0	0	0	0	0	0	0	1
16.2	secondary metabolism.phenylpropanoids	1 (0.65%)	0	0	0	0	0	1	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.65%)	0	0	0	0	1	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.65%)	0	1	0	0	0	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.65%)	0	1	0	0	0	0	0	0
20	stress	1 (0.65%)	0	0	1	0	0	0	0	0
20.2	stress.abiotic	1 (0.65%)	0	0	1	0	0	0	0	0
20.2.1	stress.abiotic.heat	1 (0.65%)	0	0	1	0	0	0	0	0
21.2.1	redox.ascorbate and glutathione.ascorbate	1 (0.65%)	0	0	0	0	1	0	0	0
26.10	misc.cytochrome P450	1 (0.65%)	0	0	0	0	0	0	0	1
26.19	misc.plastocyanin-like	1 (0.65%)	0	0	0	0	1	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.65%)	0	0	0	0	0	0	0	1
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.65%)	0	0	0	0	0	0	0	1
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	1 (0.65%)	0	0	0	1	0	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.65%)	0	0	1	0	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.65%)	0	0	1	0	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.65%)	0	0	0	1	0	0	0	0
27.3.55	RNA.regulation of transcription.HDA	1 (0.65%)	0	0	0	0	0	0	1	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.65%)	1	0	0	0	0	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.65%)	0	0	0	0	0	0	0	1
27.4	RNA.RNA binding	1 (0.65%)	0	0	0	0	1	0	0	0
29.2	protein.synthesis	1 (0.65%)	0	0	0	0	1	0	0	0
29.2.5	protein.synthesis.release	1 (0.65%)	0	0	0	0	1	0	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	1 (0.65%)	0	0	0	1	0	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.65%)	0	0	0	1	0	0	0	0
29.5.11.4.3.1	protein.degradation.ubiquitin.E3.SCF.SKP	1 (0.65%)	0	0	0	0	0	0	0	1
29.5.11.4.4	protein.degradation.ubiquitin.E3.APC	1 (0.65%)	0	0	0	0	0	1	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.65%)	0	0	0	0	1	0	0	0
3.1	minor CHO metabolism.raffinose family	1 (0.65%)	0	0	0	0	0	0	0	1
3.1.2	minor CHO metabolism.raffinose family.raffinose synthases	1 (0.65%)	0	0	0	0	0	0	0	1
3.1.2.1	minor CHO metabolism.raffinose family.raffinose synthases.known	1 (0.65%)	0	0	0	0	0	0	0	1
3.2	minor CHO metabolism.trehalose	1 (0.65%)	0	0	0	1	0	0	0	0
3.2.3	minor CHO metabolism.trehalose.potential TPS/TPP	1 (0.65%)	0	0	0	1	0	0	0	0
30.1	signalling.in sugar and nutrient physiology	1 (0.65%)	0	0	0	1	0	0	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.65%)	0	0	0	1	0	0	0	0
30.5	signalling.G-proteins	1 (0.65%)	0	0	0	0	1	0	0	0
34	transport	1 (0.65%)	0	0	0	0	0	0	0	1
34.18	transport.unspecified anions	1 (0.65%)	0	0	0	0	0	0	0	1