PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_652
Name: AUXRETGA2GMGH3
Description: TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224

#Associated genes: 842
#Associated MapMan terms: 195

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	153 (18.17%)	16	18	18	33	16	20	10	22
27.3	RNA.regulation of transcription	138 (16.39%)	15	17	17	27	14	19	10	19
29	protein	72 (8.55%)	9	14	12	7	12	8	5	5
29.4	protein.postranslational modification	41 (4.87%)	6	5	7	6	9	4	2	2
28	DNA	38 (4.51%)	1	9	5	10	5	4	2	2
28.1	DNA.synthesis/chromatin structure	35 (4.16%)	1	7	5	9	5	4	2	2
31	cell	35 (4.16%)	3	10	3	5	3	5	1	5
30	signalling	28 (3.33%)	3	3	3	5	2	6	2	4
28.1.3	DNA.synthesis/chromatin structure.histone	27 (3.21%)	1	7	3	7	5	3	0	1
34	transport	27 (3.21%)	2	3	5	7	6	2	0	2
1	PS	22 (2.61%)	5	5	1	4	2	1	2	2
20	stress	22 (2.61%)	4	4	1	6	4	2	1	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	22 (2.61%)	2	5	1	7	1	2	1	3
1.1	PS.lightreaction	21 (2.49%)	4	5	1	4	2	1	2	2
20.2	stress.abiotic	21 (2.49%)	4	4	1	6	3	2	1	0
33	development	21 (2.49%)	3	4	1	6	3	2	1	1
17	hormone metabolism	20 (2.38%)	1	4	1	4	6	1	1	2
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	20 (2.38%)	2	5	0	3	4	4	1	1
33.99	development.unspecified	20 (2.38%)	3	4	1	6	2	2	1	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	18 (2.14%)	1	1	6	5	2	2	1	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	17 (2.02%)	1	2	3	3	1	2	2	3
29.3	protein.targeting	16 (1.90%)	1	5	2	0	2	3	1	2
29.3.4	protein.targeting.secretory pathway	16 (1.90%)	1	5	2	0	2	3	1	2
31.1	cell.organisation	16 (1.90%)	1	5	2	2	1	2	0	3
17.2	hormone metabolism.auxin	15 (1.78%)	1	2	1	4	4	1	1	1
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	15 (1.78%)	1	2	1	4	4	1	1	1
29.5	protein.degradation	14 (1.66%)	2	4	3	1	1	1	1	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	13 (1.54%)	1	1	1	3	5	1	0	1
26	misc	12 (1.43%)	2	3	0	0	4	2	0	1
27.3.99	RNA.regulation of transcription.unclassified	12 (1.43%)	1	2	1	2	2	1	1	2
20.2.1	stress.abiotic.heat	11 (1.31%)	2	2	1	4	0	1	1	0
11	lipid metabolism	10 (1.19%)	2	2	2	1	1	0	1	1
31.4	cell.vesicle transport	10 (1.19%)	2	2	1	1	1	1	0	2
1.1.5	PS.lightreaction.other electron carrier (ox/red)	9 (1.07%)	2	1	0	2	2	1	0	1
1.1.5.1	PS.lightreaction.other electron carrier (ox/red).plastocyanin	9 (1.07%)	2	1	0	2	2	1	0	1
3	minor CHO metabolism	9 (1.07%)	1	1	1	3	1	0	0	2
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	9 (1.07%)	2	0	2	2	0	0	1	2
11.9	lipid metabolism.lipid degradation	8 (0.95%)	1	1	2	1	1	0	1	1
29.3.4.1	protein.targeting.secretory pathway.ER	8 (0.95%)	1	4	1	0	0	1	0	1
29.5.11	protein.degradation.ubiquitin	8 (0.95%)	2	2	1	0	1	0	1	1
30.3	signalling.calcium	8 (0.95%)	2	2	2	0	0	0	1	1
11.9.2	lipid metabolism.lipid degradation.lipases	7 (0.83%)	1	1	1	1	1	0	1	1
3.4	minor CHO metabolism.myo-inositol	7 (0.83%)	1	0	1	2	1	0	0	2
16	secondary metabolism	7 (0.83%)	1	1	1	2	0	1	1	0
27.2	RNA.transcription	7 (0.83%)	0	1	0	4	1	0	0	1
29.4.1	protein.postranslational modification.kinase	7 (0.83%)	0	1	1	3	0	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	7 (0.83%)	0	1	1	3	0	1	0	1
3.4.4	minor CHO metabolism.myo-inositol.myo inositol oxygenases	7 (0.83%)	1	0	1	2	1	0	0	2
30.11	signalling.light	7 (0.83%)	0	1	0	2	0	3	0	1
31.2	cell.division	7 (0.83%)	0	1	0	2	1	2	1	0
34.11	transport.NDP-sugars at the ER	7 (0.83%)	0	2	0	4	1	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	7 (0.83%)	1	1	1	0	2	1	0	1
10	cell wall	6 (0.71%)	0	0	2	0	1	0	1	2
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	6 (0.71%)	1	1	1	1	1	0	0	1
18	Co-factor and vitamine metabolism	6 (0.71%)	2	1	0	2	1	0	0	0
18.3	Co-factor and vitamine metabolism.riboflavin	6 (0.71%)	2	1	0	2	1	0	0	0
18.3.1	Co-factor and vitamine metabolism.riboflavin.GTP cyclohydrolase II	6 (0.71%)	2	1	0	2	1	0	0	0
21	redox	6 (0.71%)	2	0	2	1	0	0	0	1
1.1.1	PS.lightreaction.photosystem II	5 (0.59%)	0	1	1	2	0	0	1	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	5 (0.59%)	0	1	1	2	0	0	1	0
1.1.2	PS.lightreaction.photosystem I	5 (0.59%)	2	3	0	0	0	0	0	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	5 (0.59%)	2	3	0	0	0	0	0	0
4	glycolysis	5 (0.59%)	0	1	1	0	2	1	0	0
13	amino acid metabolism	5 (0.59%)	3	0	0	0	1	1	0	0
15	metal handling	5 (0.59%)	1	0	0	0	3	0	0	1
15.2	metal handling.binding, chelation and storage	5 (0.59%)	1	0	0	0	3	0	0	1
16.1	secondary metabolism.isoprenoids	5 (0.59%)	1	1	0	1	0	1	1	0
17.5	hormone metabolism.ethylene	5 (0.59%)	0	2	0	0	2	0	0	1
21.1	redox.thioredoxin	5 (0.59%)	2	0	1	1	0	0	0	1
27.1	RNA.processing	5 (0.59%)	1	0	0	0	1	1	0	2
27.3.67	RNA.regulation of transcription.putative transcription regulator	5 (0.59%)	1	0	3	0	0	1	0	0
30.5	signalling.G-proteins	5 (0.59%)	1	0	0	1	0	1	1	1
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	4 (0.48%)	1	1	0	0	0	1	1	0
16.1.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway.DXS	4 (0.48%)	1	1	0	0	0	1	1	0
20.2.4	stress.abiotic.touch/wounding	4 (0.48%)	1	1	0	0	1	1	0	0
27.3.63	RNA.regulation of transcription.PHD finger transcription factor	4 (0.48%)	0	0	0	0	1	2	0	1
30.2	signalling.receptor kinases	4 (0.48%)	0	0	0	1	0	2	0	1
34.12	transport.metal	4 (0.48%)	0	0	2	0	2	0	0	0
4.2	glycolysis.plastid branch	3 (0.36%)	0	1	1	0	0	1	0	0
10.7	cell wall.modification	3 (0.36%)	0	0	1	0	0	0	1	1
13.2	amino acid metabolism.degradation	3 (0.36%)	2	0	0	0	1	0	0	0
14	S-assimilation	3 (0.36%)	1	0	0	0	0	0	2	0
14.2	S-assimilation.APR	3 (0.36%)	1	0	0	0	0	0	2	0
19	tetrapyrrole synthesis	3 (0.36%)	0	1	1	1	0	0	0	0
19.14	tetrapyrrole synthesis.protochlorophyllide reductase	3 (0.36%)	0	1	1	1	0	0	0	0
22	polyamine metabolism	3 (0.36%)	0	0	0	3	0	0	0	0
22.1	polyamine metabolism.synthesis	3 (0.36%)	0	0	0	3	0	0	0	0
22.1.2	polyamine metabolism.synthesis.SAM decarboxylase	3 (0.36%)	0	0	0	3	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	3 (0.36%)	1	0	0	0	1	0	0	1
26.7	misc.oxidases - copper, flavone etc	3 (0.36%)	1	1	0	0	1	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (0.36%)	1	1	0	0	1	0	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	3 (0.36%)	0	0	1	0	0	0	1	1
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)	3 (0.36%)	0	0	0	0	1	1	0	1
27.4	RNA.RNA binding	3 (0.36%)	0	0	1	2	0	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	3 (0.36%)	0	0	0	2	0	1	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	3 (0.36%)	0	0	0	2	0	1	0	0
28.2	DNA.repair	3 (0.36%)	0	2	0	1	0	0	0	0
29.3.4.2	protein.targeting.secretory pathway.golgi	3 (0.36%)	0	0	1	0	0	1	0	1
29.3.4.99	protein.targeting.secretory pathway.unspecified	3 (0.36%)	0	1	0	0	1	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	3 (0.36%)	0	0	1	0	0	2	0	0
34.19	transport.Major Intrinsic Proteins	3 (0.36%)	0	0	1	0	0	1	0	1
34.19.2	transport.Major Intrinsic Proteins.TIP	3 (0.36%)	0	0	1	0	0	1	0	1
4.2.14	glycolysis.plastid branch.pyruvate kinase (PK)	3 (0.36%)	0	1	1	0	0	1	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	2 (0.24%)	0	0	0	0	0	0	1	1
2	major CHO metabolism	2 (0.24%)	1	1	0	0	0	0	0	0
10.5	cell wall.cell wall proteins	2 (0.24%)	0	0	1	0	1	0	0	0
13.1	amino acid metabolism.synthesis	2 (0.24%)	1	0	0	0	0	1	0	0
13.2.6	amino acid metabolism.degradation.aromatic aa	2 (0.24%)	1	0	0	0	1	0	0	0
13.2.6.2	amino acid metabolism.degradation.aromatic aa.tyrosine	2 (0.24%)	1	0	0	0	1	0	0	0
16.2	secondary metabolism.phenylpropanoids	2 (0.24%)	0	0	1	1	0	0	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	2 (0.24%)	0	0	0	0	2	0	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	2 (0.24%)	0	1	0	0	0	0	0	1
2.2	major CHO metabolism.degradation	2 (0.24%)	1	1	0	0	0	0	0	0
2.2.2	major CHO metabolism.degradation.starch	2 (0.24%)	1	1	0	0	0	0	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	2 (0.24%)	1	1	0	0	0	0	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	2 (0.24%)	1	1	0	0	0	0	0	0
7	OPP	2 (0.24%)	0	0	0	0	1	0	1	0
21.1.1	redox.thioredoxin.PDIL	2 (0.24%)	2	0	0	0	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	2 (0.24%)	0	0	0	0	0	1	0	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (0.24%)	0	0	0	0	0	2	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	2 (0.24%)	1	0	0	0	0	0	0	1
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	2 (0.24%)	0	0	0	2	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	2 (0.24%)	1	0	0	0	0	0	0	1
27.3.36	RNA.regulation of transcription.Argonaute	2 (0.24%)	0	1	0	0	0	1	0	0
29.2.1.2.1.30	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S30	2 (0.24%)	1	0	0	0	0	0	0	1
30.11.1	signalling.light.COP9 signalosome	2 (0.24%)	0	0	0	1	0	1	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (0.24%)	0	0	0	1	0	0	0	1
4.1	glycolysis.cytosolic branch	2 (0.24%)	0	0	0	0	2	0	0	0
30.1	signalling.in sugar and nutrient physiology	2 (0.24%)	0	0	1	0	1	0	0	0
31.3	cell.cycle	2 (0.24%)	0	2	0	0	0	0	0	0
34.13	transport.peptides and oligopeptides	2 (0.24%)	0	0	0	2	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	2 (0.24%)	1	0	0	1	0	0	0	0
4.1.8	glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)	2 (0.24%)	0	0	0	0	2	0	0	0
7.1	OPP.oxidative PP	2 (0.24%)	0	0	0	0	1	0	1	0
7.1.3	OPP.oxidative PP.6-phosphogluconate dehydrogenase	2 (0.24%)	0	0	0	0	1	0	1	0
1.2	PS.photorespiration	1 (0.12%)	1	0	0	0	0	0	0	0
1.2.6	PS.photorespiration.hydroxypyruvate reductase	1 (0.12%)	1	0	0	0	0	0	0	0
10.2	cell wall.cellulose synthesis	1 (0.12%)	0	0	0	0	0	0	0	1
10.5.4	cell wall.cell wall proteins.HRGP	1 (0.12%)	0	0	1	0	0	0	0	0
11.10	lipid metabolism.glycolipid synthesis	1 (0.12%)	0	1	0	0	0	0	0	0
11.10.2	lipid metabolism.glycolipid synthesis.DGDG synthase	1 (0.12%)	0	1	0	0	0	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.12%)	1	0	0	0	0	0	0	0
11.8.2	lipid metabolism.exotics (steroids, squalene etc).methylsterol monooxygenase	1 (0.12%)	1	0	0	0	0	0	0	0
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.12%)	0	0	1	0	0	0	0	0
11.9.4.2	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	1 (0.12%)	0	0	1	0	0	0	0	0
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	1 (0.12%)	1	0	0	0	0	0	0	0
13.1.1.2	amino acid metabolism.synthesis.central amino acid metabolism.aspartate	1 (0.12%)	1	0	0	0	0	0	0	0
13.1.1.2.1	amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase	1 (0.12%)	1	0	0	0	0	0	0	0
13.1.3	amino acid metabolism.synthesis.aspartate family	1 (0.12%)	0	0	0	0	0	1	0	0
13.1.3.1	amino acid metabolism.synthesis.aspartate family.asparagine	1 (0.12%)	0	0	0	0	0	1	0	0
13.2.5	amino acid metabolism.degradation.serine-glycine-cysteine group	1 (0.12%)	1	0	0	0	0	0	0	0
13.2.5.2	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	1 (0.12%)	1	0	0	0	0	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	1 (0.12%)	0	0	0	1	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.12%)	0	1	0	0	0	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.12%)	1	0	0	0	0	0	0	0
23.4.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase	1 (0.12%)	0	0	0	0	1	0	0	0
3.2	minor CHO metabolism.trehalose	1 (0.12%)	0	0	0	1	0	0	0	0
3.99	minor CHO metabolism.misc	1 (0.12%)	0	1	0	0	0	0	0	0
20.1	stress.biotic	1 (0.12%)	0	0	0	0	1	0	0	0
21.6	redox.dismutases and catalases	1 (0.12%)	0	0	1	0	0	0	0	0
23	nucleotide metabolism	1 (0.12%)	0	0	0	0	1	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.12%)	0	0	0	0	1	0	0	0
26.12	misc.peroxidases	1 (0.12%)	0	0	0	0	1	0	0	0
26.13	misc.acid and other phosphatases	1 (0.12%)	0	0	0	0	0	1	0	0
26.14	misc.oxygenases	1 (0.12%)	0	0	0	0	1	0	0	0
26.17	misc.dynamin	1 (0.12%)	0	0	0	0	1	0	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.12%)	0	1	0	0	0	0	0	0
26.28	misc.GDSL-motif lipase	1 (0.12%)	0	0	0	0	0	1	0	0
26.6	misc.O-methyl transferases	1 (0.12%)	0	1	0	0	0	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	1 (0.12%)	0	0	0	0	0	0	0	1
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.12%)	0	0	0	0	0	0	1	0
27.3.39	RNA.regulation of transcription.AtSR Transcription Factor family	1 (0.12%)	0	0	0	0	1	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.12%)	1	0	0	0	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.12%)	0	0	0	0	0	0	0	1
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.12%)	0	0	0	1	0	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.12%)	1	0	0	0	0	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.12%)	0	0	0	0	0	0	1	0
28.1.3.1	DNA.synthesis/chromatin structure.histone.H1	1 (0.12%)	1	0	0	0	0	0	0	0
29.1	protein.aa activation	1 (0.12%)	0	0	0	0	0	0	1	0
29.1.19	protein.aa activation.arginine-tRNA ligase	1 (0.12%)	0	0	0	0	0	0	1	0
29.2.1.1.1.1.530	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S30A	1 (0.12%)	0	1	0	0	0	0	0	0
29.2.1.99.99	protein.synthesis.ribosomal protein.unknown.unknown	1 (0.12%)	0	0	0	0	1	0	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	1 (0.12%)	0	0	0	0	0	0	1	0
29.3.4.4	protein.targeting.secretory pathway.plasma membrane	1 (0.12%)	0	0	0	0	1	0	0	0
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	1 (0.12%)	0	0	1	0	0	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.12%)	0	0	0	0	1	0	0	0
29.5.2	protein.degradation.autophagy	1 (0.12%)	0	1	0	0	0	0	0	0
3.2.2	minor CHO metabolism.trehalose.TPP	1 (0.12%)	0	0	0	1	0	0	0	0
30.2.25	signalling.receptor kinases.wall associated kinase	1 (0.12%)	0	0	0	0	0	1	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.12%)	0	0	0	0	0	1	0	0
30.9	signalling.lipids	1 (0.12%)	0	0	0	0	1	0	0	0
30.99	signalling.unspecified	1 (0.12%)	0	0	0	1	0	0	0	0
33.2	development.late embryogenesis abundant	1 (0.12%)	0	0	0	0	1	0	0	0
34.14	transport.unspecified cations	1 (0.12%)	0	0	1	0	0	0	0	0
34.18	transport.unspecified anions	1 (0.12%)	0	0	0	0	1	0	0	0