PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_635
Name: LFY
Description: Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins

#Associated genes: 148
#Associated MapMan terms: 106

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	25 (16.89%)	2	0	1	8	4	3	0	7
27.3	RNA.regulation of transcription	21 (14.19%)	2	0	1	6	4	2	0	6
29	protein	12 (8.11%)	0	0	0	5	4	0	0	3
29.4	protein.postranslational modification	10 (6.76%)	0	0	0	5	3	0	0	2
17	hormone metabolism	9 (6.08%)	0	0	1	5	1	1	1	0
1	PS	8 (5.41%)	0	0	1	4	0	2	0	1
1.1	PS.lightreaction	7 (4.73%)	0	0	1	4	0	2	0	0
26	misc	6 (4.05%)	2	2	0	1	1	0	0	0
30	signalling	6 (4.05%)	1	1	0	1	1	1	0	1
1.1.1	PS.lightreaction.photosystem II	5 (3.38%)	0	0	1	2	0	2	0	0
34	transport	5 (3.38%)	0	0	0	1	1	1	1	1
17.4	hormone metabolism.cytokinin	4 (2.70%)	0	0	1	3	0	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	4 (2.70%)	0	0	1	3	0	0	0	0
21	redox	4 (2.70%)	2	0	0	0	1	1	0	0
26.13	misc.acid and other phosphatases	4 (2.70%)	2	2	0	0	0	0	0	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	3 (2.03%)	0	0	1	0	0	2	0	0
9	mitochondrial electron transport / ATP synthesis	3 (2.03%)	1	1	0	1	0	0	0	0
17.2	hormone metabolism.auxin	3 (2.03%)	0	0	0	2	0	0	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	3 (2.03%)	0	0	0	2	0	0	1	0
19	tetrapyrrole synthesis	3 (2.03%)	0	0	0	1	0	0	0	2
21.2	redox.ascorbate and glutathione	3 (2.03%)	1	0	0	0	1	1	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	3 (2.03%)	0	0	0	0	1	1	0	1
28	DNA	3 (2.03%)	0	0	0	1	1	0	1	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	2 (1.35%)	0	0	0	2	0	0	0	0
1.1.2	PS.lightreaction.photosystem I	2 (1.35%)	0	0	0	2	0	0	0	0
1.1.2.1	PS.lightreaction.photosystem I.LHC-I	2 (1.35%)	0	0	0	2	0	0	0	0
10	cell wall	2 (1.35%)	0	0	1	0	1	0	0	0
11	lipid metabolism	2 (1.35%)	0	0	1	1	0	0	0	0
11.3	lipid metabolism.Phospholipid synthesis	2 (1.35%)	0	0	1	1	0	0	0	0
17.5	hormone metabolism.ethylene	2 (1.35%)	0	0	0	0	1	1	0	0
19.14	tetrapyrrole synthesis.protochlorophyllide reductase	2 (1.35%)	0	0	0	1	0	0	0	1
20	stress	2 (1.35%)	0	0	0	2	0	0	0	0
20.1	stress.biotic	2 (1.35%)	0	0	0	2	0	0	0	0
27.1	RNA.processing	2 (1.35%)	0	0	0	1	0	1	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (1.35%)	0	0	0	0	0	1	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (1.35%)	0	0	1	0	1	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	2 (1.35%)	0	0	0	2	0	0	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	2 (1.35%)	0	0	0	1	0	0	0	1
28.99	DNA.unspecified	2 (1.35%)	0	0	0	1	0	0	1	0
29.4.1	protein.postranslational modification.kinase	2 (1.35%)	0	0	0	1	0	0	0	1
29.5	protein.degradation	2 (1.35%)	0	0	0	0	1	0	0	1
29.5.11.4.1	protein.degradation.ubiquitin.E3.HECT	2 (1.35%)	0	0	0	2	0	0	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (1.35%)	1	0	0	0	1	0	0	0
30.11	signalling.light	2 (1.35%)	0	0	0	0	0	1	0	1
30.2	signalling.receptor kinases	2 (1.35%)	0	1	0	0	1	0	0	0
34.4	transport.nitrate	2 (1.35%)	0	0	0	0	0	0	1	1
1.3	PS.calvin cycle	1 (0.68%)	0	0	0	0	0	0	0	1
1.3.6	PS.calvin cycle.aldolase	1 (0.68%)	0	0	0	0	0	0	0	1
8	TCA / org transformation	1 (0.68%)	0	0	0	0	0	1	0	0
10.6	cell wall.degradation	1 (0.68%)	0	0	0	0	1	0	0	0
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.68%)	0	0	0	0	1	0	0	0
10.7	cell wall.modification	1 (0.68%)	0	0	1	0	0	0	0	0
11.3.7	lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase	1 (0.68%)	0	0	1	0	0	0	0	0
13	amino acid metabolism	1 (0.68%)	0	0	0	0	0	0	0	1
13.1	amino acid metabolism.synthesis	1 (0.68%)	0	0	0	0	0	0	0	1
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	1 (0.68%)	0	0	0	0	0	0	0	1
13.1.1.1	amino acid metabolism.synthesis.central amino acid metabolism.GABA	1 (0.68%)	0	0	0	0	0	0	0	1
13.1.1.1.1	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	1 (0.68%)	0	0	0	0	0	0	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.68%)	0	0	0	0	0	1	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.68%)	0	0	0	0	1	0	0	0
19.10	tetrapyrrole synthesis.magnesium chelatase	1 (0.68%)	0	0	0	0	0	0	0	1
21.2.1	redox.ascorbate and glutathione.ascorbate	1 (0.68%)	1	0	0	0	0	0	0	0
21.4	redox.glutaredoxins	1 (0.68%)	1	0	0	0	0	0	0	0
23	nucleotide metabolism	1 (0.68%)	0	1	0	0	0	0	0	0
23.2	nucleotide metabolism.degradation	1 (0.68%)	0	1	0	0	0	0	0	0
23.2.2	nucleotide metabolism.degradation.purine	1 (0.68%)	0	1	0	0	0	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.68%)	0	1	0	0	0	0	0	0
26.11	misc.alcohol dehydrogenases	1 (0.68%)	0	0	0	1	0	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.68%)	0	0	0	0	1	0	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.68%)	0	0	0	0	1	0	0	0
27.1.1	RNA.processing.splicing	1 (0.68%)	0	0	0	0	0	1	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.68%)	0	0	0	1	0	0	0	0
27.2	RNA.transcription	1 (0.68%)	0	0	0	0	0	0	0	1
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	1 (0.68%)	0	0	0	0	0	0	0	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	1 (0.68%)	0	0	0	1	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.68%)	0	0	0	0	0	0	0	1
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.68%)	0	0	0	1	0	0	0	0
27.3.31	RNA.regulation of transcription.TUB transcription factor family	1 (0.68%)	1	0	0	0	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.68%)	0	0	0	0	1	0	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	1 (0.68%)	1	0	0	0	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.68%)	0	0	0	1	0	0	0	0
27.3.71	RNA.regulation of transcription.SNF7	1 (0.68%)	0	0	0	0	1	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	1 (0.68%)	0	0	0	0	0	0	0	1
27.4	RNA.RNA binding	1 (0.68%)	0	0	0	1	0	0	0	0
28.1	DNA.synthesis/chromatin structure	1 (0.68%)	0	0	0	0	1	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.68%)	0	0	0	0	1	0	0	0
29.2.1.1.1.2.20	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L20	1 (0.68%)	0	0	0	1	0	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.68%)	0	0	0	1	0	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.68%)	0	0	0	1	0	0	0	0
29.5.7	protein.degradation.metalloprotease	1 (0.68%)	0	0	0	0	1	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.68%)	0	0	0	0	0	0	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.68%)	0	0	0	0	1	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.68%)	0	1	0	0	0	0	0	0
8.1	TCA / org transformation.TCA	1 (0.68%)	0	0	0	0	0	1	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.68%)	1	0	0	0	0	0	0	0
9.2	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.68%)	0	0	0	1	0	0	0	0
9.7	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	1 (0.68%)	0	1	0	0	0	0	0	0
30.3	signalling.calcium	1 (0.68%)	0	0	0	1	0	0	0	0
30.5	signalling.G-proteins	1 (0.68%)	1	0	0	0	0	0	0	0
34.1	transport.p- and v-ATPases	1 (0.68%)	0	0	0	1	0	0	0	0
34.12	transport.metal	1 (0.68%)	0	0	0	0	0	1	0	0
34.22	transport.cyclic nucleotide or calcium regulated channels	1 (0.68%)	0	0	0	0	1	0	0	0
8.1.9	TCA / org transformation.TCA.malate DH	1 (0.68%)	0	0	0	0	0	1	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.68%)	1	0	0	0	0	0	0	0
9.2.1	mitochondrial electron transport / ATP synthesis.NADH-DH.type II	1 (0.68%)	0	0	0	1	0	0	0	0
9.2.1.4	mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix	1 (0.68%)	0	0	0	1	0	0	0	0