PLAZA 3.0 Dicots : Binding Sites

InterPro domains associated with a binding site

Binding site: Motif_602
Name: E2Fc;E2Fd
Description: The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants

#Associated genes: 132
#Associated InterPro terms: 147

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InterPro	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	stu	vvi
IPR000571	Zinc finger, CCCH-type	17 (12.88%)	2	6	1	2	2	2	1	0	0	1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	11 (8.33%)	1	2	1	1	0	1	2	1	1	1
IPR009072	Histone-fold	10 (7.58%)	0	0	1	0	3	1	2	1	1	1
IPR013083	Zinc finger, RING/FYVE/PHD-type	10 (7.58%)	1	1	0	2	0	0	1	2	2	1
IPR003958	Transcription factor CBF/NF-Y/archaeal histone	9 (6.82%)	0	0	1	0	2	1	2	1	1	1
IPR014001	Helicase, superfamily 1/2, ATP-binding domain	8 (6.06%)	1	1	1	1	0	0	1	1	1	1
IPR003957	Transcription factor, NFYB/HAP3 subunit	8 (6.06%)	0	0	1	0	1	1	2	1	1	1
IPR003956	Transcription factor, NFYB/HAP3, conserved site	8 (6.06%)	0	0	1	0	1	1	2	1	1	1
IPR014905	HIP116, Rad5p N-terminal	7 (5.30%)	1	1	0	1	0	0	1	1	1	1
IPR001650	Helicase, C-terminal	7 (5.30%)	1	1	0	1	0	0	1	1	1	1
IPR012340	Nucleic acid-binding, OB-fold	7 (5.30%)	0	1	1	1	0	3	1	0	0	0
IPR000330	SNF2-related	7 (5.30%)	1	1	0	1	0	0	1	1	1	1
IPR018957	Zinc finger, C3HC4 RING-type	7 (5.30%)	1	1	0	1	0	0	1	1	1	1
IPR001841	Zinc finger, RING-type	7 (5.30%)	1	1	0	1	0	0	1	1	1	1
IPR017907	Zinc finger, RING-type, conserved site	7 (5.30%)	1	1	0	1	0	0	1	1	1	1
IPR016024	Armadillo-type fold	6 (4.55%)	0	0	0	1	1	0	1	1	1	1
IPR002130	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	6 (4.55%)	1	0	1	1	0	1	1	0	0	1
IPR022031	Telomere-associated protein Rif1, N-terminal	6 (4.55%)	0	0	0	0	2	0	1	1	1	1
IPR015633	E2F Family	5 (3.79%)	0	0	1	1	0	0	0	1	1	1
IPR026555	KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein	5 (3.79%)	1	0	0	0	2	0	1	0	0	1
IPR003316	Transcription factor E2F/dimerisation partner (TDP)	5 (3.79%)	0	0	1	1	0	0	0	1	1	1
IPR011991	Winged helix-turn-helix DNA-binding domain	5 (3.79%)	0	0	1	1	0	0	0	1	1	1
IPR014939	CDT1 Geminin-binding domain-like	4 (3.03%)	1	0	0	0	0	0	1	1	1	0
IPR009075	Acyl-CoA dehydrogenase/oxidase C-terminal	3 (2.27%)	0	2	0	0	0	0	0	0	1	0
IPR009100	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain	3 (2.27%)	0	2	0	0	0	0	0	0	1	0
IPR012258	Acyl-CoA oxidase	3 (2.27%)	0	2	0	0	0	0	0	0	1	0
IPR002655	Acyl-CoA oxidase, C-terminal	3 (2.27%)	0	2	0	0	0	0	0	0	1	0
IPR006091	Acyl-CoA oxidase/dehydrogenase, central domain	3 (2.27%)	0	2	0	0	0	0	0	0	1	0
IPR011989	Armadillo-like helical	3 (2.27%)	0	0	0	1	1	0	1	0	0	0
IPR001357	BRCT domain	3 (2.27%)	0	0	0	0	0	1	0	1	1	0
IPR004861	Protein-tyrosine phosphatase, SIW14-like	3 (2.27%)	0	0	0	1	0	1	1	0	0	0
IPR016130	Protein-tyrosine phosphatase, active site	3 (2.27%)	0	0	0	1	0	1	1	0	0	0
IPR020428	Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic	3 (2.27%)	0	0	0	1	0	1	1	0	0	0
IPR005144	ATP-cone	2 (1.52%)	0	0	0	0	2	0	0	0	0	0
IPR013591	Brevis radix (BRX) domain	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR011611	Carbohydrate kinase PfkB	2 (1.52%)	0	0	0	0	0	2	0	0	0	0
IPR002173	Carbohydrate/puine kinase, PfkB, conserved site	2 (1.52%)	0	0	0	0	0	2	0	0	0	0
IPR004367	Cyclin, C-terminal domain	2 (1.52%)	1	1	0	0	0	0	0	0	0	0
IPR006671	Cyclin, N-terminal	2 (1.52%)	1	1	0	0	0	0	0	0	0	0
IPR013763	Cyclin-like	2 (1.52%)	1	1	0	0	0	0	0	0	0	0
IPR024647	DNA polymerase alpha catalytic subunit, N-terminal domain	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR023211	DNA polymerase, palm domain	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR006172	DNA-directed DNA polymerase, family B	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR017964	DNA-directed DNA polymerase, family B, conserved site	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR006133	DNA-directed DNA polymerase, family B, exonuclease domain	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR006134	DNA-directed DNA polymerase, family B, multifunctional domain	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR004578	DNA-directed DNA polymerase, family B, pol2	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR000306	FYVE zinc finger	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR027925	MCM N-terminal domain	2 (1.52%)	0	1	0	0	0	1	0	0	0	0
IPR001208	Mini-chromosome maintenance, DNA-dependent ATPase	2 (1.52%)	0	1	0	0	0	1	0	0	0	0
IPR018525	Mini-chromosome maintenance, conserved site	2 (1.52%)	0	1	0	0	0	1	0	0	0	0
IPR008721	Origin recognition complex, subunit 6	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR011993	Pleckstrin homology-like domain	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR000408	Regulator of chromosome condensation, RCC1	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR012337	Ribonuclease H-like domain	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR008926	Ribonucleotide reductase R1 subunit, N-terminal	2 (1.52%)	0	0	0	0	2	0	0	0	0	0
IPR000788	Ribonucleotide reductase large subunit, C-terminal	2 (1.52%)	0	0	0	0	2	0	0	0	0	0
IPR013509	Ribonucleotide reductase large subunit, N-terminal	2 (1.52%)	0	0	0	0	2	0	0	0	0	0
IPR013346	Ribonucleotide reductase, class I , alpha subunit	2 (1.52%)	0	0	0	0	2	0	0	0	0	0
IPR019734	Tetratricopeptide repeat	2 (1.52%)	0	0	0	0	0	0	0	0	1	1
IPR013026	Tetratricopeptide repeat-containing domain	2 (1.52%)	0	0	0	0	0	0	0	0	1	1
IPR011990	Tetratricopeptide-like helical	2 (1.52%)	0	0	0	0	0	0	0	0	1	1
IPR027988	Transcription factor BREVIS RADIX, N-terminal domain	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR015940	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR015088	Zinc finger, DNA-directed DNA polymerase, family B, alpha	2 (1.52%)	0	0	0	0	1	0	0	1	0	0
IPR017455	Zinc finger, FYVE-related	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR011011	Zinc finger, FYVE/PHD-type	2 (1.52%)	0	0	0	0	0	0	0	1	1	0
IPR002912	ACT domain	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR001471	AP2/ERF domain	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR013786	Acyl-CoA dehydrogenase/oxidase, N-terminal	1 (0.76%)	0	1	0	0	0	0	0	0	0	0
IPR000225	Armadillo	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR003340	B3 DNA binding domain	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR022712	Beta-Casp domain	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR001279	Beta-lactamase-like	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR001487	Bromodomain	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR005172	CRC domain	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR023577	CYTH-like domain	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR013320	Concanavalin A-like lectin/glucanase, subgroup	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR008972	Cupredoxin	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR000432	DNA mismatch repair protein MutS, C-terminal	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR016151	DNA mismatch repair protein MutS, N-terminal	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR007861	DNA mismatch repair protein MutS, clamp	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR007860	DNA mismatch repair protein MutS, connector domain	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR007696	DNA mismatch repair protein MutS, core	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR007695	DNA mismatch repair protein MutS-like, N-terminal	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR007238	DNA primase large subunit, eukaryotic/archaeal	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR016558	DNA primase, large subunit, eukaryotic	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR008048	DNA replication licensing factor Mcm	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR008045	DNA replication licensing factor Mcm2	1 (0.76%)	0	1	0	0	0	0	0	0	0	0
IPR016177	DNA-binding domain	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR015300	DNA-binding pseudobarrel domain	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR007599	Derlin	1 (0.76%)	0	0	1	0	0	0	0	0	0	0
IPR025064	Domain of unknown function DUF4005	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR004263	Exostosin-like	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR001810	F-box domain	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR020472	G-protein beta WD-40 repeat	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR015916	Galactose oxidase, beta-propeller	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR011835	Glycogen/starch synthase, ADP-glucose type	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR001296	Glycosyl transferase, family 1	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR002495	Glycosyl transferase, family 8	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR006121	Heavy metal-associated domain, HMA	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR000558	Histone H2B	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR007125	Histone core	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR023282	Hydroxymethylglutaryl-CoA reductase, N-terminal	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR002202	Hydroxymethylglutaryl-CoA reductase, class I/II	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR009023	Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR023074	Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR023076	Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR009029	Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR004554	Hydroxymethylglutaryl-CoA reductase, eukaryotic/arcaheal type	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR000048	IQ motif, EF-hand binding site	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR000555	JAB/MPN domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR006652	Kelch repeat type 1	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR001611	Leucine-rich repeat	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR003590	Leucine-rich repeat, ribonuclease inhibitor subtype	1 (0.76%)	0	0	0	0	0	0	0	0	1	0
IPR003591	Leucine-rich repeat, typical subtype	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR013210	Leucine-rich repeat-containing N-terminal, type 2	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR008521	Magnesium transporter NIPA	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR001117	Multicopper oxidase, type 1	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR011706	Multicopper oxidase, type 2	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR011707	Multicopper oxidase, type 3	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR027353	NET domain	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR001375	Peptidase S9, prolyl oligopeptidase, catalytic domain	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR023302	Peptidase S9A, N-terminal domain	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR002470	Peptidase S9A, prolyl oligopeptidase	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR000719	Protein kinase domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR017441	Protein kinase, ATP binding site	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR011009	Protein kinase-like domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR000387	Protein-tyrosine/Dual specificity phosphatase	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR018999	RNA helicase UPF1, UPF2-interacting domain	1 (0.76%)	0	0	1	0	0	0	0	0	0	0
IPR011108	RNA-metabolising metallo-beta-lactamase	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR013955	Replication factor A, C-terminal	1 (0.76%)	0	0	0	0	0	0	1	0	0	0
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR008271	Serine/threonine-protein kinase, active site	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR011042	Six-bladed beta-propeller, TolB-like	1 (0.76%)	0	0	0	0	0	1	0	0	0	0
IPR013534	Starch synthase, catalytic domain	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR024813	TONSOKU	1 (0.76%)	0	0	0	0	0	0	0	0	1	0
IPR001440	Tetratricopeptide TPR1	1 (0.76%)	0	0	0	0	0	0	0	0	0	1
IPR012336	Thioredoxin-like fold	1 (0.76%)	0	0	0	0	1	0	0	0	0	0
IPR003613	U box domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR015063	USP8 dimerisation domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR001680	WD40 repeat	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR017986	WD40-repeat-containing domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR015943	WD40/YVTN repeat-like-containing domain	1 (0.76%)	0	0	0	1	0	0	0	0	0	0
IPR007656	Zein-binding domain	1 (0.76%)	0	0	0	0	0	0	0	0	1	0
IPR007087	Zinc finger, C2H2	1 (0.76%)	0	0	0	0	0	1	0	0	0	0