Gene Ontology terms associated with a binding site

Binding site
Motif_6
Name
AGL1 binding site motif
Description
Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures
#Associated genes
36
#Associated GO terms
326
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell16 (44.44%)2222231002
GO:0044464cell part16 (44.44%)2222231002
GO:0005622intracellular16 (44.44%)2222231002
GO:0043229intracellular organelle16 (44.44%)2222231002
GO:0044424intracellular part16 (44.44%)2222231002
GO:0043226organelle16 (44.44%)2222231002
GO:0043231intracellular membrane-bounded organelle15 (41.67%)2222221002
GO:0043227membrane-bounded organelle15 (41.67%)2222221002
GO:0005634nucleus15 (41.67%)2222221002
GO:0005737cytoplasm4 (11.11%)1001110000
GO:0044444cytoplasmic part1 (2.78%)0000010000
GO:0043232intracellular non-membrane-bounded organelle1 (2.78%)0000010000
GO:0044446intracellular organelle part1 (2.78%)0000010000
GO:0032991macromolecular complex1 (2.78%)0000010000
GO:0043228non-membrane-bounded organelle1 (2.78%)0000010000
GO:0044422organelle part1 (2.78%)0000010000
GO:0030529ribonucleoprotein complex1 (2.78%)0000010000
GO:0044391ribosomal subunit1 (2.78%)0000010000
GO:0005840ribosome1 (2.78%)0000010000
GO:0015935small ribosomal subunit1 (2.78%)0000010000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding31 (86.11%)2222863222
GO:0005515protein binding17 (47.22%)2122621001
GO:1901363heterocyclic compound binding14 (38.89%)1221131012
GO:0043167ion binding14 (38.89%)1001412221
GO:0097159organic cyclic compound binding14 (38.89%)1221131012
GO:0003676nucleic acid binding12 (33.33%)1221131001
GO:0003677DNA binding11 (30.56%)1221121001
GO:0001071nucleic acid binding transcription factor activity10 (27.78%)1221021001
GO:0003700sequence-specific DNA binding transcription factor activity10 (27.78%)1221021001
GO:0043168anion binding8 (22.22%)0000201221
GO:0003824catalytic activity8 (22.22%)1001310011
GO:0046983protein dimerization activity7 (19.44%)1121101000
GO:0008289lipid binding6 (16.67%)0000201210
GO:0008429phosphatidylethanolamine binding6 (16.67%)0000201210
GO:0005543phospholipid binding6 (16.67%)0000201210
GO:0043169cation binding5 (13.89%)1001111000
GO:0046872metal ion binding5 (13.89%)1001111000
GO:0043565sequence-specific DNA binding5 (13.89%)0100021001
GO:0046914transition metal ion binding5 (13.89%)1001111000
GO:0000975regulatory region DNA binding4 (11.11%)0100020001
GO:0001067regulatory region nucleic acid binding4 (11.11%)0100020001
GO:0044212transcription regulatory region DNA binding4 (11.11%)0100020001
GO:0000976transcription regulatory region sequence-specific DNA binding4 (11.11%)0100020001
GO:0016881acid-amino acid ligase activity3 (8.33%)1001100000
GO:0016787hydrolase activity3 (8.33%)0000110001
GO:0016874ligase activity3 (8.33%)1001100000
GO:0016879ligase activity, forming carbon-nitrogen bonds3 (8.33%)1001100000
GO:0019787small conjugating protein ligase activity3 (8.33%)1001100000
GO:0008134transcription factor binding3 (8.33%)1001100000
GO:0004842ubiquitin-protein ligase activity3 (8.33%)1001100000
GO:0008270zinc ion binding3 (8.33%)1001100000
GO:0005524ATP binding2 (5.56%)0000000011
GO:0030554adenyl nucleotide binding2 (5.56%)0000000011
GO:0032559adenyl ribonucleotide binding2 (5.56%)0000000011
GO:0097367carbohydrate derivative binding2 (5.56%)0000000011
GO:0016788hydrolase activity, acting on ester bonds2 (5.56%)0000110000
GO:0030145manganese ion binding2 (5.56%)0000011000
GO:0001882nucleoside binding2 (5.56%)0000000011
GO:1901265nucleoside phosphate binding2 (5.56%)0000000011
GO:0000166nucleotide binding2 (5.56%)0000000011
GO:0045735nutrient reservoir activity2 (5.56%)0000011000
GO:0016791phosphatase activity2 (5.56%)0000110000
GO:0004721phosphoprotein phosphatase activity2 (5.56%)0000110000
GO:0042578phosphoric ester hydrolase activity2 (5.56%)0000110000
GO:0004722protein serine/threonine phosphatase activity2 (5.56%)0000110000
GO:0001883purine nucleoside binding2 (5.56%)0000000011
GO:0017076purine nucleotide binding2 (5.56%)0000000011
GO:0032550purine ribonucleoside binding2 (5.56%)0000000011
GO:0035639purine ribonucleoside triphosphate binding2 (5.56%)0000000011
GO:0032555purine ribonucleotide binding2 (5.56%)0000000011
GO:0032549ribonucleoside binding2 (5.56%)0000000011
GO:0032553ribonucleotide binding2 (5.56%)0000000011
GO:0036094small molecule binding2 (5.56%)0000000011
GO:0016740transferase activity2 (5.56%)0000100010
GO:0016772transferase activity, transferring phosphorus-containing groups2 (5.56%)0000100010
GO:0003723RNA binding1 (2.78%)0000010000
GO:0016817hydrolase activity, acting on acid anhydrides1 (2.78%)0000000001
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1 (2.78%)0000000001
GO:0016301kinase activity1 (2.78%)0000000010
GO:0060089molecular transducer activity1 (2.78%)0000010000
GO:0016773phosphotransferase activity, alcohol group as acceptor1 (2.78%)0000000010
GO:0004672protein kinase activity1 (2.78%)0000000010
GO:0004674protein serine/threonine kinase activity1 (2.78%)0000000010
GO:0004871signal transducer activity1 (2.78%)0000010000
GO:0003735structural constituent of ribosome1 (2.78%)0000010000
GO:0005198structural molecule activity1 (2.78%)0000010000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0044260cellular macromolecule metabolic process19 (52.78%)2222341012
GO:0044237cellular metabolic process19 (52.78%)2222341012
GO:0009987cellular process19 (52.78%)2222341012
GO:0043170macromolecule metabolic process19 (52.78%)2222341012
GO:0008152metabolic process19 (52.78%)2222341012
GO:0071704organic substance metabolic process19 (52.78%)2222341012
GO:0044238primary metabolic process19 (52.78%)2222341012
GO:0065007biological regulation15 (41.67%)2222221002
GO:0050789regulation of biological process15 (41.67%)2222221002
GO:0031323regulation of cellular metabolic process15 (41.67%)2222221002
GO:0050794regulation of cellular process15 (41.67%)2222221002
GO:0060255regulation of macromolecule metabolic process15 (41.67%)2222221002
GO:0019222regulation of metabolic process15 (41.67%)2222221002
GO:0080090regulation of primary metabolic process15 (41.67%)2222221002
GO:0048856anatomical structure development13 (36.11%)1101311212
GO:0009058biosynthetic process13 (36.11%)1221131002
GO:0044249cellular biosynthetic process13 (36.11%)1221131002
GO:0034645cellular macromolecule biosynthetic process13 (36.11%)1221131002
GO:0032502developmental process13 (36.11%)1101311212
GO:0010467gene expression13 (36.11%)1221131002
GO:0009059macromolecule biosynthetic process13 (36.11%)1221131002
GO:0007275multicellular organismal development13 (36.11%)1101311212
GO:0032501multicellular organismal process13 (36.11%)1101311212
GO:1901576organic substance biosynthetic process13 (36.11%)1221131002
GO:0050896response to stimulus13 (36.11%)2002430002
GO:0044707single-multicellular organism process13 (36.11%)1101311212
GO:0044767single-organism developmental process13 (36.11%)1101311212
GO:0044699single-organism process13 (36.11%)1101311212
GO:0048731system development13 (36.11%)1101311212
GO:0032774RNA biosynthetic process12 (33.33%)1221121002
GO:0016070RNA metabolic process12 (33.33%)1221121002
GO:0019438aromatic compound biosynthetic process12 (33.33%)1221121002
GO:0006725cellular aromatic compound metabolic process12 (33.33%)1221121002
GO:0044271cellular nitrogen compound biosynthetic process12 (33.33%)1221121002
GO:0034641cellular nitrogen compound metabolic process12 (33.33%)1221121002
GO:0018130heterocycle biosynthetic process12 (33.33%)1221121002
GO:0046483heterocycle metabolic process12 (33.33%)1221121002
GO:0006807nitrogen compound metabolic process12 (33.33%)1221121002
GO:0090304nucleic acid metabolic process12 (33.33%)1221121002
GO:0034654nucleobase-containing compound biosynthetic process12 (33.33%)1221121002
GO:0006139nucleobase-containing compound metabolic process12 (33.33%)1221121002
GO:1901362organic cyclic compound biosynthetic process12 (33.33%)1221121002
GO:1901360organic cyclic compound metabolic process12 (33.33%)1221121002
GO:2001141regulation of RNA biosynthetic process12 (33.33%)1221121002
GO:0051252regulation of RNA metabolic process12 (33.33%)1221121002
GO:0009889regulation of biosynthetic process12 (33.33%)1221121002
GO:0031326regulation of cellular biosynthetic process12 (33.33%)1221121002
GO:2000112regulation of cellular macromolecule biosynthetic process12 (33.33%)1221121002
GO:0010468regulation of gene expression12 (33.33%)1221121002
GO:0010556regulation of macromolecule biosynthetic process12 (33.33%)1221121002
GO:0051171regulation of nitrogen compound metabolic process12 (33.33%)1221121002
GO:0019219regulation of nucleobase-containing compound metabolic process12 (33.33%)1221121002
GO:0006355regulation of transcription, DNA-dependent12 (33.33%)1221121002
GO:0006351transcription, DNA-templated12 (33.33%)1221121002
GO:0048367shoot system development11 (30.56%)1101301211
GO:0003006developmental process involved in reproduction10 (27.78%)1101301210
GO:0009908flower development10 (27.78%)1101301210
GO:0009791post-embryonic development10 (27.78%)1101301210
GO:0000003reproduction10 (27.78%)1101301210
GO:0022414reproductive process10 (27.78%)1101301210
GO:0048608reproductive structure development10 (27.78%)1101301210
GO:0061458reproductive system development10 (27.78%)1101301210
GO:0044702single organism reproductive process10 (27.78%)1101301210
GO:0044267cellular protein metabolic process8 (22.22%)1002220010
GO:0019538protein metabolic process8 (22.22%)1002220010
GO:0006464cellular protein modification process7 (19.44%)1002210010
GO:0043412macromolecule modification7 (19.44%)1002210010
GO:0036211protein modification process7 (19.44%)1002210010
GO:0042221response to chemical7 (19.44%)0001320001
GO:0009719response to endogenous stimulus7 (19.44%)0001320001
GO:0009725response to hormone7 (19.44%)0001320001
GO:0010033response to organic substance7 (19.44%)0001320001
GO:0010228vegetative to reproductive phase transition of meristem6 (16.67%)0000201210
GO:0009733response to auxin5 (13.89%)0001120001
GO:0048513organ development4 (11.11%)1100010001
GO:0006950response to stress4 (11.11%)2001100000
GO:0009056catabolic process3 (8.33%)1001100000
GO:0044248cellular catabolic process3 (8.33%)1001100000
GO:0044265cellular macromolecule catabolic process3 (8.33%)1001100000
GO:0044257cellular protein catabolic process3 (8.33%)1001100000
GO:0006952defense response3 (8.33%)1001100000
GO:0042742defense response to bacterium3 (8.33%)1001100000
GO:0098542defense response to other organism3 (8.33%)1001100000
GO:0009057macromolecule catabolic process3 (8.33%)1001100000
GO:0043632modification-dependent macromolecule catabolic process3 (8.33%)1001100000
GO:0019941modification-dependent protein catabolic process3 (8.33%)1001100000
GO:0051704multi-organism process3 (8.33%)1001100000
GO:0048519negative regulation of biological process3 (8.33%)1001100000
GO:0031348negative regulation of defense response3 (8.33%)1001100000
GO:1900425negative regulation of defense response to bacterium3 (8.33%)1001100000
GO:0043901negative regulation of multi-organism process3 (8.33%)1001100000
GO:0002832negative regulation of response to biotic stimulus3 (8.33%)1001100000
GO:0048585negative regulation of response to stimulus3 (8.33%)1001100000
GO:1901575organic substance catabolic process3 (8.33%)1001100000
GO:0006796phosphate-containing compound metabolic process3 (8.33%)0000110010
GO:0006793phosphorus metabolic process3 (8.33%)0000110010
GO:0048827phyllome development3 (8.33%)1100000001
GO:0048518positive regulation of biological process3 (8.33%)1001100000
GO:0009896positive regulation of catabolic process3 (8.33%)1001100000
GO:0031331positive regulation of cellular catabolic process3 (8.33%)1001100000
GO:0031325positive regulation of cellular metabolic process3 (8.33%)1001100000
GO:0048522positive regulation of cellular process3 (8.33%)1001100000
GO:0032270positive regulation of cellular protein metabolic process3 (8.33%)1001100000
GO:0010604positive regulation of macromolecule metabolic process3 (8.33%)1001100000
GO:0009893positive regulation of metabolic process3 (8.33%)1001100000
GO:1901800positive regulation of proteasomal protein catabolic process3 (8.33%)1001100000
GO:0032436positive regulation of proteasomal ubiquitin-dependent protein catabolic process3 (8.33%)1001100000
GO:0045732positive regulation of protein catabolic process3 (8.33%)1001100000
GO:0051247positive regulation of protein metabolic process3 (8.33%)1001100000
GO:0045862positive regulation of proteolysis3 (8.33%)1001100000
GO:1901485positive regulation of transcription factor catabolic process3 (8.33%)1001100000
GO:0010498proteasomal protein catabolic process3 (8.33%)1001100000
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process3 (8.33%)1001100000
GO:0030163protein catabolic process3 (8.33%)1001100000
GO:0032446protein modification by small protein conjugation3 (8.33%)1001100000
GO:0070647protein modification by small protein conjugation or removal3 (8.33%)1001100000
GO:0016567protein ubiquitination3 (8.33%)1001100000
GO:0006508proteolysis3 (8.33%)1001100000
GO:0051603proteolysis involved in cellular protein catabolic process3 (8.33%)1001100000
GO:0009894regulation of catabolic process3 (8.33%)1001100000
GO:0031329regulation of cellular catabolic process3 (8.33%)1001100000
GO:0032268regulation of cellular protein metabolic process3 (8.33%)1001100000
GO:0031347regulation of defense response3 (8.33%)1001100000
GO:1900424regulation of defense response to bacterium3 (8.33%)1001100000
GO:0043900regulation of multi-organism process3 (8.33%)1001100000
GO:0061136regulation of proteasomal protein catabolic process3 (8.33%)1001100000
GO:0032434regulation of proteasomal ubiquitin-dependent protein catabolic process3 (8.33%)1001100000
GO:0042176regulation of protein catabolic process3 (8.33%)1001100000
GO:0051246regulation of protein metabolic process3 (8.33%)1001100000
GO:0030162regulation of proteolysis3 (8.33%)1001100000
GO:0002831regulation of response to biotic stimulus3 (8.33%)1001100000
GO:0048583regulation of response to stimulus3 (8.33%)1001100000
GO:0080134regulation of response to stress3 (8.33%)1001100000
GO:1901483regulation of transcription factor catabolic process3 (8.33%)1001100000
GO:0009628response to abiotic stimulus3 (8.33%)1000010001
GO:0009617response to bacterium3 (8.33%)1001100000
GO:0009607response to biotic stimulus3 (8.33%)1001100000
GO:0009416response to light stimulus3 (8.33%)1000010001
GO:0051707response to other organism3 (8.33%)1001100000
GO:0009314response to radiation3 (8.33%)1000010001
GO:0044763single-organism cellular process3 (8.33%)1101000000
GO:0044710single-organism metabolic process3 (8.33%)1101000000
GO:0036369transcription factor catabolic process3 (8.33%)1001100000
GO:0006511ubiquitin-dependent protein catabolic process3 (8.33%)1001100000
GO:0009653anatomical structure morphogenesis2 (5.56%)1100000000
GO:0048440carpel development2 (5.56%)1100000000
GO:0000902cell morphogenesis2 (5.56%)1100000000
GO:0032989cellular component morphogenesis2 (5.56%)1100000000
GO:0016043cellular component organization2 (5.56%)1100000000
GO:0071840cellular component organization or biogenesis2 (5.56%)1100000000
GO:0048869cellular developmental process2 (5.56%)1100000000
GO:0016311dephosphorylation2 (5.56%)0000110000
GO:0009567double fertilization forming a zygote and endosperm2 (5.56%)1100000000
GO:0009566fertilization2 (5.56%)1100000000
GO:0048437floral organ development2 (5.56%)1100000000
GO:0048438floral whorl development2 (5.56%)1100000000
GO:0010154fruit development2 (5.56%)1100000000
GO:0048467gynoecium development2 (5.56%)1100000000
GO:1901617organic hydroxy compound biosynthetic process2 (5.56%)1100000000
GO:1901615organic hydroxy compound metabolic process2 (5.56%)1100000000
GO:0048481ovule development2 (5.56%)1100000000
GO:0046189phenol-containing compound biosynthetic process2 (5.56%)1100000000
GO:0018958phenol-containing compound metabolic process2 (5.56%)1100000000
GO:0009699phenylpropanoid biosynthetic process2 (5.56%)1100000000
GO:0009698phenylpropanoid metabolic process2 (5.56%)1100000000
GO:0035670plant-type ovary development2 (5.56%)1100000000
GO:0048569post-embryonic organ development2 (5.56%)1100000000
GO:0010023proanthocyanidin biosynthetic process2 (5.56%)1100000000
GO:0006470protein dephosphorylation2 (5.56%)0000110000
GO:0022603regulation of anatomical structure morphogenesis2 (5.56%)1100000000
GO:0065008regulation of biological quality2 (5.56%)1100000000
GO:0022604regulation of cell morphogenesis2 (5.56%)1100000000
GO:0008360regulation of cell shape2 (5.56%)1100000000
GO:0051128regulation of cellular component organization2 (5.56%)1100000000
GO:0050793regulation of developmental process2 (5.56%)1100000000
GO:0080155regulation of double fertilization forming a zygote and endosperm2 (5.56%)1100000000
GO:0080154regulation of fertilization2 (5.56%)1100000000
GO:2000762regulation of phenylpropanoid metabolic process2 (5.56%)1100000000
GO:2000029regulation of proanthocyanidin biosynthetic process2 (5.56%)1100000000
GO:2000241regulation of reproductive process2 (5.56%)1100000000
GO:0043455regulation of secondary metabolic process2 (5.56%)1100000000
GO:1900376regulation of secondary metabolite biosynthetic process2 (5.56%)1100000000
GO:0010200response to chitin2 (5.56%)0000200000
GO:0009753response to jasmonic acid2 (5.56%)0000200000
GO:1901698response to nitrogen compound2 (5.56%)0000200000
GO:0010243response to organonitrogen compound2 (5.56%)0000200000
GO:1901700response to oxygen-containing compound2 (5.56%)0000200000
GO:0048364root development2 (5.56%)0000010001
GO:0022622root system development2 (5.56%)0000010001
GO:0019748secondary metabolic process2 (5.56%)1100000000
GO:0044550secondary metabolite biosynthetic process2 (5.56%)1100000000
GO:0048316seed development2 (5.56%)1100000000
GO:0019953sexual reproduction2 (5.56%)1100000000
GO:0044711single-organism biosynthetic process2 (5.56%)1100000000
GO:0043481anthocyanin accumulation in tissues in response to UV light1 (2.78%)1000000000
GO:1901137carbohydrate derivative biosynthetic process1 (2.78%)0001000000
GO:1901135carbohydrate derivative metabolic process1 (2.78%)0001000000
GO:0005975carbohydrate metabolic process1 (2.78%)0001000000
GO:0051641cellular localization1 (2.78%)0001000000
GO:0070727cellular macromolecule localization1 (2.78%)0001000000
GO:0034613cellular protein localization1 (2.78%)0001000000
GO:0051234establishment of localization1 (2.78%)0001000000
GO:0051649establishment of localization in cell1 (2.78%)0001000000
GO:0045184establishment of protein localization1 (2.78%)0001000000
GO:0009813flavonoid biosynthetic process1 (2.78%)1000000000
GO:0009812flavonoid metabolic process1 (2.78%)1000000000
GO:0009101glycoprotein biosynthetic process1 (2.78%)0001000000
GO:0009100glycoprotein metabolic process1 (2.78%)0001000000
GO:0070085glycosylation1 (2.78%)0001000000
GO:0006886intracellular protein transport1 (2.78%)0001000000
GO:0046907intracellular transport1 (2.78%)0001000000
GO:0048366leaf development1 (2.78%)0000000001
GO:0051179localization1 (2.78%)0001000000
GO:0043413macromolecule glycosylation1 (2.78%)0001000000
GO:0033036macromolecule localization1 (2.78%)0001000000
GO:0071702organic substance transport1 (2.78%)0001000000
GO:0016310phosphorylation1 (2.78%)0000000010
GO:0043476pigment accumulation1 (2.78%)1000000000
GO:0043478pigment accumulation in response to UV light1 (2.78%)1000000000
GO:0043480pigment accumulation in tissues1 (2.78%)1000000000
GO:0043479pigment accumulation in tissues in response to UV light1 (2.78%)1000000000
GO:0043473pigmentation1 (2.78%)1000000000
GO:0006471protein ADP-ribosylation1 (2.78%)0001000000
GO:0006486protein glycosylation1 (2.78%)0001000000
GO:0008104protein localization1 (2.78%)0001000000
GO:0006468protein phosphorylation1 (2.78%)0000000010
GO:0015031protein transport1 (2.78%)0001000000
GO:0009411response to UV1 (2.78%)1000000000
GO:0009409response to cold1 (2.78%)1000000000
GO:0009605response to external stimulus1 (2.78%)1000000000
GO:0010218response to far red light1 (2.78%)0000000001
GO:0080167response to karrikin1 (2.78%)0000000001
GO:0010114response to red light1 (2.78%)0000000001
GO:0009639response to red or far red light1 (2.78%)0000000001
GO:0009266response to temperature stimulus1 (2.78%)1000000000
GO:0044723single-organism carbohydrate metabolic process1 (2.78%)0001000000
GO:0006412translation1 (2.78%)0000010000
GO:0006810transport1 (2.78%)0001000000
GO:0010048vernalization response1 (2.78%)1000000000
GO:0016192vesicle-mediated transport1 (2.78%)0001000000