Gene Ontology terms associated with a binding site

Binding site
Motif_518
Name
SPHCOREZMC1
Description
Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response
#Associated genes
238
#Associated GO terms
1016
 
Biological Process
Molecular Function
Cellular Component






Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding139 (58.40%)387742242081010
GO:1901363heterocyclic compound binding95 (39.92%)276629159588
GO:0097159organic cyclic compound binding95 (39.92%)276629159588
GO:0003676nucleic acid binding81 (34.03%)264622137588
GO:0043167ion binding63 (26.47%)264321107343
GO:0003824catalytic activity57 (23.95%)225219109215
GO:0005515protein binding51 (21.43%)031216137432
GO:0043169cation binding44 (18.49%)14231474342
GO:0046872metal ion binding44 (18.49%)14231474342
GO:0003677DNA binding38 (15.97%)01131175235
GO:0016787hydrolase activity23 (9.66%)11001051212
GO:0016740transferase activity21 (8.82%)1131634002
GO:0001071nucleic acid binding transcription factor activity20 (8.40%)1002533402
GO:0046983protein dimerization activity20 (8.40%)0101564111
GO:0003700sequence-specific DNA binding transcription factor activity20 (8.40%)1002533402
GO:0043168anion binding19 (7.98%)1220733001
GO:1901265nucleoside phosphate binding17 (7.14%)0221722001
GO:0000166nucleotide binding17 (7.14%)0221722001
GO:0036094small molecule binding17 (7.14%)0221722001
GO:0097367carbohydrate derivative binding16 (6.72%)0220722001
GO:0001882nucleoside binding16 (6.72%)0220722001
GO:0001883purine nucleoside binding16 (6.72%)0220722001
GO:0017076purine nucleotide binding16 (6.72%)0220722001
GO:0032550purine ribonucleoside binding16 (6.72%)0220722001
GO:0035639purine ribonucleoside triphosphate binding16 (6.72%)0220722001
GO:0032555purine ribonucleotide binding16 (6.72%)0220722001
GO:0032549ribonucleoside binding16 (6.72%)0220722001
GO:0032553ribonucleotide binding16 (6.72%)0220722001
GO:0005524ATP binding15 (6.30%)0220622001
GO:0030554adenyl nucleotide binding15 (6.30%)0220622001
GO:0032559adenyl ribonucleotide binding15 (6.30%)0220622001
GO:0003682chromatin binding13 (5.46%)0001321123
GO:0043565sequence-specific DNA binding13 (5.46%)0002242111
GO:0042802identical protein binding11 (4.62%)0101330111
GO:0016817hydrolase activity, acting on acid anhydrides10 (4.20%)0100600111
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides10 (4.20%)0100600111
GO:0016301kinase activity10 (4.20%)0120322000
GO:0017111nucleoside-triphosphatase activity10 (4.20%)0100600111
GO:0016773phosphotransferase activity, alcohol group as acceptor10 (4.20%)0120322000
GO:0042803protein homodimerization activity10 (4.20%)0101320111
GO:0016462pyrophosphatase activity10 (4.20%)0100600111
GO:0016772transferase activity, transferring phosphorus-containing groups10 (4.20%)0120322000
GO:0046914transition metal ion binding10 (4.20%)1001233000
GO:0004386helicase activity9 (3.78%)0100500111
GO:0004672protein kinase activity9 (3.78%)0110322000
GO:0005215transporter activity9 (3.78%)1201111110
GO:0008270zinc ion binding9 (3.78%)1001133000
GO:0016788hydrolase activity, acting on ester bonds8 (3.36%)0000241001
GO:0004674protein serine/threonine kinase activity8 (3.36%)0110312000
GO:0003678DNA helicase activity7 (2.94%)0000500110
GO:0022892substrate-specific transporter activity7 (2.94%)1101101110
GO:0016491oxidoreductase activity6 (2.52%)0000023001
GO:0022891substrate-specific transmembrane transporter activity6 (2.52%)1101101100
GO:0022857transmembrane transporter activity6 (2.52%)1101101100
GO:0003723RNA binding5 (2.10%)1010011010
GO:0022804active transmembrane transporter activity5 (2.10%)1101101000
GO:0008324cation transmembrane transporter activity5 (2.10%)1101101000
GO:0048037cofactor binding5 (2.10%)1000022000
GO:0015075ion transmembrane transporter activity5 (2.10%)1101101000
GO:0016881acid-amino acid ligase activity4 (1.68%)0001300000
GO:0042887amide transmembrane transporter activity4 (1.68%)1101100000
GO:0005275amine transmembrane transporter activity4 (1.68%)1101100000
GO:0051739ammonia transmembrane transporter activity4 (1.68%)1101100000
GO:0015267channel activity4 (1.68%)1101100000
GO:0030234enzyme regulator activity4 (1.68%)0000301000
GO:0016874ligase activity4 (1.68%)0001300000
GO:0016879ligase activity, forming carbon-nitrogen bonds4 (1.68%)0001300000
GO:0015200methylammonium transmembrane transporter activity4 (1.68%)1101100000
GO:0045735nutrient reservoir activity4 (1.68%)0010101001
GO:0015101organic cation transmembrane transporter activity4 (1.68%)1101100000
GO:0022803passive transmembrane transporter activity4 (1.68%)1101100000
GO:0016791phosphatase activity4 (1.68%)0000021001
GO:0042578phosphoric ester hydrolase activity4 (1.68%)0000021001
GO:0022838substrate-specific channel activity4 (1.68%)1101100000
GO:0016757transferase activity, transferring glycosyl groups4 (1.68%)0010101001
GO:0015204urea transmembrane transporter activity4 (1.68%)1101100000
GO:0015250water channel activity4 (1.68%)1101100000
GO:0005372water transmembrane transporter activity4 (1.68%)1101100000
GO:0010285L,L-diaminopimelate aminotransferase activity3 (1.26%)1000011000
GO:0008092cytoskeletal protein binding3 (1.26%)0000300000
GO:0051213dioxygenase activity3 (1.26%)0000012000
GO:0016798hydrolase activity, acting on glycosyl bonds3 (1.26%)0000200100
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds3 (1.26%)0000200100
GO:0010279indole-3-acetic acid amido synthetase activity3 (1.26%)0001200000
GO:0016853isomerase activity3 (1.26%)0010011000
GO:0016829lyase activity3 (1.26%)1010100000
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3 (1.26%)0000012000
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3 (1.26%)0000012000
GO:0004721phosphoprotein phosphatase activity3 (1.26%)0000011001
GO:0032403protein complex binding3 (1.26%)0000300000
GO:0004722protein serine/threonine phosphatase activity3 (1.26%)0000011001
GO:0030170pyridoxal phosphate binding3 (1.26%)1000011000
GO:0008483transaminase activity3 (1.26%)1000011000
GO:0016746transferase activity, transferring acyl groups3 (1.26%)0011100000
GO:0016758transferase activity, transferring hexosyl groups3 (1.26%)0000101001
GO:0016769transferase activity, transferring nitrogenous groups3 (1.26%)1000011000
GO:00038431,3-beta-D-glucan synthase activity2 (0.84%)0000001001
GO:0008026ATP-dependent helicase activity2 (0.84%)0100000001
GO:0016887ATPase activity2 (0.84%)0100000001
GO:0042623ATPase activity, coupled2 (0.84%)0100000001
GO:0051020GTPase binding2 (0.84%)0000000110
GO:0008536Ran GTPase binding2 (0.84%)0000000110
GO:0017016Ras GTPase binding2 (0.84%)0000000110
GO:0008757S-adenosylmethionine-dependent methyltransferase activity2 (0.84%)0000100001
GO:0003978UDP-glucose 4-epimerase activity2 (0.84%)0000011000
GO:0035251UDP-glucosyltransferase activity2 (0.84%)0000001001
GO:0008194UDP-glycosyltransferase activity2 (0.84%)0000001001
GO:0003779actin binding2 (0.84%)0000200000
GO:0051015actin filament binding2 (0.84%)0000200000
GO:0033613activating transcription factor binding2 (0.84%)0000020000
GO:0016835carbon-oxygen lyase activity2 (0.84%)1000100000
GO:0052689carboxylic ester hydrolase activity2 (0.84%)0000200000
GO:0050662coenzyme binding2 (0.84%)0000011000
GO:0019899enzyme binding2 (0.84%)0000000110
GO:0004857enzyme inhibitor activity2 (0.84%)0000200000
GO:0046527glucosyltransferase activity2 (0.84%)0000001001
GO:0008289lipid binding2 (0.84%)0000200000
GO:0008168methyltransferase activity2 (0.84%)0000100001
GO:0030599pectinesterase activity2 (0.84%)0000200000
GO:0019208phosphatase regulator activity2 (0.84%)0000101000
GO:0046982protein heterodimerization activity2 (0.84%)0000020000
GO:0019888protein phosphatase regulator activity2 (0.84%)0000101000
GO:0008601protein phosphatase type 2A regulator activity2 (0.84%)0000101000
GO:0008565protein transporter activity2 (0.84%)0000000110
GO:0070035purine NTP-dependent helicase activity2 (0.84%)0100000001
GO:0016854racemase and epimerase activity2 (0.84%)0000011000
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives2 (0.84%)0000011000
GO:0008430selenium binding2 (0.84%)0000011000
GO:0031267small GTPase binding2 (0.84%)0000000110
GO:0008134transcription factor binding2 (0.84%)0000020000
GO:0016741transferase activity, transferring one-carbon groups2 (0.84%)0000100001
GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity1 (0.42%)0000010000
GO:0005525GTP binding1 (0.42%)0000100000
GO:0003924GTPase activity1 (0.42%)0000100000
GO:0008171O-methyltransferase activity1 (0.42%)0000100000
GO:0016832aldehyde-lyase activity1 (0.42%)0010000000
GO:0015297antiporter activity1 (0.42%)0000001000
GO:0008422beta-glucosidase activity1 (0.42%)0000000100
GO:0016830carbon-carbon lyase activity1 (0.42%)0010000000
GO:0016837carbon-oxygen lyase activity, acting on polysaccharides1 (0.42%)0000100000
GO:0047782coniferin beta-glucosidase activity1 (0.42%)0000000100
GO:0005507copper ion binding1 (0.42%)0000100000
GO:0008831dTDP-4-dehydrorhamnose reductase activity1 (0.42%)0000010000
GO:0009055electron carrier activity1 (0.42%)0000100000
GO:0004175endopeptidase activity1 (0.42%)0000010000
GO:0004527exonuclease activity1 (0.42%)0000010000
GO:0004332fructose-bisphosphate aldolase activity1 (0.42%)0010000000
GO:0015926glucosidase activity1 (0.42%)0000000100
GO:0019001guanyl nucleotide binding1 (0.42%)0000100000
GO:0032561guanyl ribonucleotide binding1 (0.42%)0000100000
GO:0016836hydro-lyase activity1 (0.42%)1000000000
GO:0015078hydrogen ion transmembrane transporter activity1 (0.42%)0000001000
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1 (0.42%)1000000000
GO:0016815hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles1 (0.42%)1000000000
GO:0080061indole-3-acetonitrile nitrilase activity1 (0.42%)1000000000
GO:0080109indole-3-acetonitrile nitrile hydratase activity1 (0.42%)1000000000
GO:0022890inorganic cation transmembrane transporter activity1 (0.42%)0000001000
GO:0052745inositol phosphate phosphatase activity1 (0.42%)0000010000
GO:0046030inositol trisphosphate phosphatase activity1 (0.42%)0000010000
GO:0004512inositol-3-phosphate synthase activity1 (0.42%)0010000000
GO:0016872intramolecular lyase activity1 (0.42%)0010000000
GO:0022884macromolecule transmembrane transporter activity1 (0.42%)0000000100
GO:0008017microtubule binding1 (0.42%)0000100000
GO:0060089molecular transducer activity1 (0.42%)0000001000
GO:0015077monovalent inorganic cation transmembrane transporter activity1 (0.42%)0000001000
GO:0000257nitrilase activity1 (0.42%)1000000000
GO:0018822nitrile hydratase activity1 (0.42%)1000000000
GO:0004518nuclease activity1 (0.42%)0000010000
GO:0019205nucleobase-containing compound kinase activity1 (0.42%)0010000000
GO:0019206nucleoside kinase activity1 (0.42%)0010000000
GO:0016614oxidoreductase activity, acting on CH-OH group of donors1 (0.42%)0000010000
GO:0016651oxidoreductase activity, acting on NAD(P)H1 (0.42%)0000001000
GO:0016655oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1 (0.42%)0000001000
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1 (0.42%)0000010000
GO:0030570pectate lyase activity1 (0.42%)0000100000
GO:0008233peptidase activity1 (0.42%)0000010000
GO:0070011peptidase activity, acting on L-amino acid peptides1 (0.42%)0000010000
GO:0008320protein transmembrane transporter activity1 (0.42%)0000000100
GO:0015291secondary active transmembrane transporter activity1 (0.42%)0000001000
GO:0017171serine hydrolase activity1 (0.42%)0000010000
GO:0004252serine-type endopeptidase activity1 (0.42%)0000010000
GO:0008236serine-type peptidase activity1 (0.42%)0000010000
GO:0004871signal transducer activity1 (0.42%)0000001000
GO:0019787small conjugating protein ligase activity1 (0.42%)0000100000
GO:0015298solute:cation antiporter activity1 (0.42%)0000001000
GO:0015299solute:hydrogen antiporter activity1 (0.42%)0000001000
GO:0016229steroid dehydrogenase activity1 (0.42%)0000010000
GO:0033764steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1 (0.42%)0000010000
GO:0003735structural constituent of ribosome1 (0.42%)0000010000
GO:0005198structural molecule activity1 (0.42%)0000010000
GO:0016763transferase activity, transferring pentosyl groups1 (0.42%)0010000000
GO:0015631tubulin binding1 (0.42%)0000100000
GO:0004842ubiquitin-protein ligase activity1 (0.42%)0000100000
GO:0004845uracil phosphoribosyltransferase activity1 (0.42%)0010000000
GO:0004849uridine kinase activity1 (0.42%)0010000000
GO:0016762xyloglucan:xyloglucosyl transferase activity1 (0.42%)0000100000

Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell96 (40.34%)7284241219758
GO:0044464cell part96 (40.34%)7284241219758
GO:0005622intracellular81 (34.03%)7253181216756
GO:0044424intracellular part77 (32.35%)7253181214556
GO:0043229intracellular organelle72 (30.25%)6243171212556
GO:0043226organelle72 (30.25%)6243171212556
GO:0043231intracellular membrane-bounded organelle67 (28.15%)6243141112555
GO:0043227membrane-bounded organelle67 (28.15%)6243141112555
GO:0005737cytoplasm41 (17.23%)6151757234
GO:0005634nucleus40 (16.81%)21121086442
GO:0044444cytoplasmic part33 (13.87%)5131546224
GO:0016020membrane25 (10.50%)2212526113
GO:0071944cell periphery23 (9.66%)2132804003
GO:0009536plastid20 (8.40%)4131413210
GO:0009507chloroplast18 (7.56%)4121412210
GO:0005886plasma membrane14 (5.88%)2112303002
GO:0005618cell wall12 (5.04%)1121501001
GO:0030312external encapsulating structure12 (5.04%)1121501001
GO:0044446intracellular organelle part12 (5.04%)1101431100
GO:0044422organelle part12 (5.04%)1101431100
GO:0005794Golgi apparatus11 (4.62%)1101113003
GO:0032991macromolecular complex10 (4.20%)0000512002
GO:0009505plant-type cell wall9 (3.78%)1121201001
GO:0043234protein complex8 (3.36%)0000502001
GO:0044425membrane part7 (2.94%)1000012012
GO:0030054cell junction6 (2.52%)1111100001
GO:0005911cell-cell junction6 (2.52%)1111100001
GO:0044434chloroplast part6 (2.52%)1101110100
GO:0031090organelle membrane6 (2.52%)1101110100
GO:0009506plasmodesma6 (2.52%)1111100001
GO:0044435plastid part6 (2.52%)1101110100
GO:0055044symplast6 (2.52%)1111100001
GO:1902494catalytic complex5 (2.10%)0000202001
GO:0042807central vacuole5 (2.10%)1101110000
GO:0009941chloroplast envelope5 (2.10%)1101100100
GO:0005829cytosol5 (2.10%)1010011001
GO:0031975envelope5 (2.10%)1101100100
GO:0005576extracellular region5 (2.10%)0001400000
GO:0043232intracellular non-membrane-bounded organelle5 (2.10%)0000310001
GO:0031224intrinsic to membrane5 (2.10%)1000011011
GO:0043228non-membrane-bounded organelle5 (2.10%)0000310001
GO:0031967organelle envelope5 (2.10%)1101100100
GO:0000325plant-type vacuole5 (2.10%)1101110000
GO:0009705plant-type vacuole membrane5 (2.10%)1101110000
GO:0009526plastid envelope5 (2.10%)1101100100
GO:0000326protein storage vacuole5 (2.10%)1101110000
GO:0000322storage vacuole5 (2.10%)1101110000
GO:0005774vacuolar membrane5 (2.10%)1101110000
GO:0044437vacuolar part5 (2.10%)1101110000
GO:0005773vacuole5 (2.10%)1101110000
GO:0016021integral to membrane4 (1.68%)1000001011
GO:0044430cytoskeletal part3 (1.26%)0000300000
GO:0005856cytoskeleton3 (1.26%)0000300000
GO:00001481,3-beta-D-glucan synthase complex2 (0.84%)0000001001
GO:0044431Golgi apparatus part2 (0.84%)0000011000
GO:0005795Golgi stack2 (0.84%)0000011000
GO:0015629actin cytoskeleton2 (0.84%)0000200000
GO:0005884actin filament2 (0.84%)0000200000
GO:0044459plasma membrane part2 (0.84%)0000001001
GO:0000159protein phosphatase type 2A complex2 (0.84%)0000101000
GO:0008287protein serine/threonine phosphatase complex2 (0.84%)0000101000
GO:0030529ribonucleoprotein complex2 (0.84%)0000010001
GO:0005840ribosome2 (0.84%)0000010001
GO:1990234transferase complex2 (0.84%)0000001001
GO:0019005SCF ubiquitin ligase complex1 (0.42%)0000100000
GO:0031225anchored to membrane1 (0.42%)0000010000
GO:0048046apoplast1 (0.42%)0000100000
GO:0005938cell cortex1 (0.42%)0000100000
GO:0044448cell cortex part1 (0.42%)0000100000
GO:0031969chloroplast membrane1 (0.42%)0000000100
GO:0009570chloroplast stroma1 (0.42%)0000010000
GO:0030863cortical cytoskeleton1 (0.42%)0000100000
GO:0055028cortical microtubule1 (0.42%)0000100000
GO:0030981cortical microtubule cytoskeleton1 (0.42%)0000100000
GO:0010005cortical microtubule, transverse to long axis1 (0.42%)0000100000
GO:0031461cullin-RING ubiquitin ligase complex1 (0.42%)0000100000
GO:0005881cytoplasmic microtubule1 (0.42%)0000100000
GO:0044445cytosolic part1 (0.42%)0000000001
GO:0022626cytosolic ribosome1 (0.42%)0000000001
GO:0005783endoplasmic reticulum1 (0.42%)0000001000
GO:0005768endosome1 (0.42%)0000000001
GO:0005811lipid particle1 (0.42%)0000000010
GO:0005874microtubule1 (0.42%)0000100000
GO:0015630microtubule cytoskeleton1 (0.42%)0000100000
GO:0012511monolayer-surrounded lipid storage body1 (0.42%)0000000010
GO:0034357photosynthetic membrane1 (0.42%)0000001000
GO:0042170plastid membrane1 (0.42%)0000000100
GO:0009532plastid stroma1 (0.42%)0000010000
GO:0009579thylakoid1 (0.42%)0000001000
GO:0042651thylakoid membrane1 (0.42%)0000001000
GO:0044436thylakoid part1 (0.42%)0000001000
GO:0005802trans-Golgi network1 (0.42%)0000000001
GO:0000151ubiquitin ligase complex1 (0.42%)0000100000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009987cellular process129 (54.20%)5374462417779
GO:0008152metabolic process117 (49.16%)43743526166610
GO:0071704organic substance metabolic process111 (46.64%)4374352413669
GO:0044237cellular metabolic process109 (45.80%)4374342314668
GO:0044238primary metabolic process108 (45.38%)3374332413669
GO:0043170macromolecule metabolic process95 (39.92%)2343312111569
GO:0044260cellular macromolecule metabolic process93 (39.08%)2343312011568
GO:0044699single-organism process86 (36.13%)3254261617544
GO:0065007biological regulation84 (35.29%)523426219455
GO:0006807nitrogen compound metabolic process76 (31.93%)325326157456
GO:1901360organic cyclic compound metabolic process75 (31.51%)224326157556
GO:0050789regulation of biological process74 (31.09%)323321219345
GO:0009058biosynthetic process73 (30.67%)4243181710447
GO:0006725cellular aromatic compound metabolic process73 (30.67%)224326146556
GO:0044249cellular biosynthetic process73 (30.67%)4243181710447
GO:0046483heterocycle metabolic process73 (30.67%)224326147456
GO:1901576organic substance biosynthetic process73 (30.67%)4243181710447
GO:0034641cellular nitrogen compound metabolic process72 (30.25%)224326146456
GO:0050794regulation of cellular process71 (29.83%)323321189345
GO:0006139nucleobase-containing compound metabolic process69 (28.99%)124324146456
GO:0090304nucleic acid metabolic process67 (28.15%)122324146456
GO:0044763single-organism cellular process65 (27.31%)314223119543
GO:0034645cellular macromolecule biosynthetic process64 (26.89%)223316168347
GO:0009059macromolecule biosynthetic process64 (26.89%)223316168347
GO:1901362organic cyclic compound biosynthetic process64 (26.89%)223318157446
GO:0019438aromatic compound biosynthetic process62 (26.05%)223318146446
GO:0018130heterocycle biosynthetic process62 (26.05%)223318147346
GO:0044271cellular nitrogen compound biosynthetic process61 (25.63%)223318146346
GO:0019222regulation of metabolic process61 (25.63%)223318156345
GO:0009889regulation of biosynthetic process60 (25.21%)223318146345
GO:0031326regulation of cellular biosynthetic process60 (25.21%)223318146345
GO:0031323regulation of cellular metabolic process60 (25.21%)223318146345
GO:0010467gene expression59 (24.79%)222316156346
GO:0034654nucleobase-containing compound biosynthetic process58 (24.37%)123316146346
GO:2000112regulation of cellular macromolecule biosynthetic process58 (24.37%)223316146345
GO:0010556regulation of macromolecule biosynthetic process58 (24.37%)223316146345
GO:0060255regulation of macromolecule metabolic process58 (24.37%)223316146345
GO:0051171regulation of nitrogen compound metabolic process58 (24.37%)122318146345
GO:0080090regulation of primary metabolic process58 (24.37%)223316146345
GO:0032774RNA biosynthetic process57 (23.95%)122316146346
GO:0016070RNA metabolic process57 (23.95%)122316146346
GO:0010468regulation of gene expression57 (23.95%)222316146345
GO:0006351transcription, DNA-templated57 (23.95%)122316146346
GO:2001141regulation of RNA biosynthetic process56 (23.53%)122316146345
GO:0051252regulation of RNA metabolic process56 (23.53%)122316146345
GO:0019219regulation of nucleobase-containing compound metabolic process56 (23.53%)122316146345
GO:0006355regulation of transcription, DNA-dependent56 (23.53%)122316146345
GO:0050896response to stimulus55 (23.11%)33331989223
GO:0032502developmental process45 (18.91%)112211119224
GO:0044767single-organism developmental process45 (18.91%)112211119224
GO:0032501multicellular organismal process43 (18.07%)11229119224
GO:0048856anatomical structure development42 (17.65%)11229118224
GO:0007275multicellular organismal development42 (17.65%)11229118224
GO:0044707single-multicellular organism process42 (17.65%)11229118224
GO:0048731system development38 (15.97%)11227117223
GO:0051716cellular response to stimulus36 (15.13%)11111772222
GO:0044710single-organism metabolic process35 (14.71%)20411167211
GO:0042221response to chemical34 (14.29%)23121083113
GO:0010033response to organic substance31 (13.03%)1312982113
GO:0048513organ development29 (12.18%)1112675222
GO:0009719response to endogenous stimulus28 (11.76%)0312971113
GO:0009725response to hormone27 (11.34%)0312961113
GO:0007154cell communication26 (10.92%)1111972112
GO:0016043cellular component organization26 (10.92%)10001712221
GO:0071840cellular component organization or biogenesis26 (10.92%)10001712221
GO:0009791post-embryonic development25 (10.50%)0112465222
GO:0007165signal transduction25 (10.50%)1101972112
GO:0023052signaling25 (10.50%)1101972112
GO:0044700single organism signaling25 (10.50%)1101972112
GO:0003006developmental process involved in reproduction24 (10.08%)0112654113
GO:0000003reproduction24 (10.08%)0112654113
GO:0022414reproductive process24 (10.08%)0112654113
GO:0009628response to abiotic stimulus24 (10.08%)1133634111
GO:0048608reproductive structure development22 (9.24%)0112653112
GO:0061458reproductive system development22 (9.24%)0112653112
GO:1901700response to oxygen-containing compound22 (9.24%)1111481113
GO:0070887cellular response to chemical stimulus21 (8.82%)1101851112
GO:0071310cellular response to organic substance21 (8.82%)1101851112
GO:0019538protein metabolic process21 (8.82%)1110663111
GO:0044702single organism reproductive process21 (8.82%)0112453113
GO:0048869cellular developmental process20 (8.40%)0101542223
GO:0044267cellular protein metabolic process20 (8.40%)1110653111
GO:0009314response to radiation20 (8.40%)0113633111
GO:0006796phosphate-containing compound metabolic process19 (7.98%)0151443001
GO:0006793phosphorus metabolic process19 (7.98%)0151443001
GO:0009416response to light stimulus19 (7.98%)0113533111
GO:0006950response to stress19 (7.98%)2020823110
GO:0071495cellular response to endogenous stimulus18 (7.56%)0101840112
GO:0032870cellular response to hormone stimulus18 (7.56%)0101840112
GO:0009755hormone-mediated signaling pathway18 (7.56%)0101840112
GO:0048518positive regulation of biological process18 (7.56%)0101551221
GO:0009891positive regulation of biosynthetic process18 (7.56%)0101551221
GO:0031328positive regulation of cellular biosynthetic process18 (7.56%)0101551221
GO:0031325positive regulation of cellular metabolic process18 (7.56%)0101551221
GO:0048522positive regulation of cellular process18 (7.56%)0101551221
GO:0009893positive regulation of metabolic process18 (7.56%)0101551221
GO:0051173positive regulation of nitrogen compound metabolic process18 (7.56%)0101551221
GO:0030154cell differentiation17 (7.14%)0101342222
GO:0033993response to lipid17 (7.14%)0101460113
GO:0048367shoot system development17 (7.14%)1001264111
GO:0009888tissue development17 (7.14%)0101351222
GO:1901701cellular response to oxygen-containing compound16 (6.72%)1101351112
GO:0008544epidermis development16 (6.72%)0101341222
GO:0010154fruit development16 (6.72%)0111640111
GO:0051254positive regulation of RNA metabolic process16 (6.72%)0101351221
GO:0010628positive regulation of gene expression16 (6.72%)0101351221
GO:0010557positive regulation of macromolecule biosynthetic process16 (6.72%)0101351221
GO:0010604positive regulation of macromolecule metabolic process16 (6.72%)0101351221
GO:0045935positive regulation of nucleobase-containing compound metabolic process16 (6.72%)0101351221
GO:0045893positive regulation of transcription, DNA-dependent16 (6.72%)0101351221
GO:0043588skin development16 (6.72%)0101341222
GO:0009653anatomical structure morphogenesis15 (6.30%)0010444110
GO:0009913epidermal cell differentiation15 (6.30%)0101331222
GO:0030855epithelial cell differentiation15 (6.30%)0101331222
GO:0060429epithelium development15 (6.30%)0101331222
GO:0040007growth15 (6.30%)0101621112
GO:0065008regulation of biological quality15 (6.30%)2001721110
GO:0044711single-organism biosynthetic process15 (6.30%)2020234101
GO:0007568aging14 (5.88%)1101431111
GO:0005975carbohydrate metabolic process14 (5.88%)0030222212
GO:0048589developmental growth14 (5.88%)0101521112
GO:0010260organ senescence14 (5.88%)1101431111
GO:0048364root development14 (5.88%)0111332111
GO:0022622root system development14 (5.88%)0111332111
GO:0048316seed development14 (5.88%)0111440111
GO:0071554cell wall organization or biogenesis13 (5.46%)0000811111
GO:0071396cellular response to lipid13 (5.46%)0101340112
GO:0051234establishment of localization13 (5.46%)1301