PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_47
Name: CARGNCAT
Description: Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo

#Associated genes: 297
#Associated MapMan terms: 165

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	73 (24.58%)	2	7	4	21	16	11	4	8
27.3	RNA.regulation of transcription	65 (21.89%)	2	6	3	19	15	10	2	8
29	protein	22 (7.41%)	2	1	2	6	5	1	1	4
30	signalling	14 (4.71%)	1	1	1	2	2	3	1	3
26	misc	11 (3.70%)	1	0	2	1	2	2	1	2
34	transport	11 (3.70%)	2	1	0	4	1	1	0	2
31	cell	9 (3.03%)	0	1	0	2	2	3	1	0
10	cell wall	8 (2.69%)	2	0	1	2	3	0	0	0
20	stress	8 (2.69%)	1	1	1	2	1	1	1	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	8 (2.69%)	0	1	1	3	1	1	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	8 (2.69%)	1	2	1	2	1	0	0	1
29.5	protein.degradation	8 (2.69%)	0	0	1	3	2	0	0	2
17	hormone metabolism	7 (2.36%)	1	0	0	0	1	2	0	3
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	7 (2.36%)	0	0	1	2	2	1	1	0
33	development	7 (2.36%)	2	1	0	1	1	0	0	2
29.4	protein.postranslational modification	6 (2.02%)	1	0	0	2	2	1	0	0
33.99	development.unspecified	6 (2.02%)	2	1	0	1	0	0	0	2
10.1	cell wall.precursor synthesis	5 (1.68%)	1	0	1	1	2	0	0	0
10.1.6	cell wall.precursor synthesis.GAE	5 (1.68%)	1	0	1	1	2	0	0	0
29.5.11	protein.degradation.ubiquitin	5 (1.68%)	0	0	1	2	0	0	0	2
30.2	signalling.receptor kinases	5 (1.68%)	1	0	1	0	1	1	1	0
31.1	cell.organisation	5 (1.68%)	0	0	0	2	1	2	0	0
1	PS	4 (1.35%)	0	0	0	1	0	0	3	0
11	lipid metabolism	4 (1.35%)	0	1	0	1	1	0	1	0
16	secondary metabolism	4 (1.35%)	0	0	2	0	2	0	0	0
20.1	stress.biotic	4 (1.35%)	1	0	1	1	1	0	0	0
20.2	stress.abiotic	4 (1.35%)	0	1	0	1	0	1	1	0
27.1	RNA.processing	4 (1.35%)	0	0	1	2	1	0	0	0
27.1.2	RNA.processing.RNA helicase	4 (1.35%)	0	0	1	2	1	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	4 (1.35%)	0	0	0	2	2	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	4 (1.35%)	0	0	0	2	0	0	0	2
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (1.35%)	0	0	0	1	3	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	4 (1.35%)	1	1	0	2	0	0	0	0
29.2	protein.synthesis	4 (1.35%)	1	0	0	1	0	0	1	1
29.4.1	protein.postranslational modification.kinase	4 (1.35%)	0	0	0	2	2	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (1.35%)	0	0	0	2	2	0	0	0
30.11	signalling.light	4 (1.35%)	0	0	0	2	0	1	0	1
30.2.17	signalling.receptor kinases.DUF 26	4 (1.35%)	0	0	1	0	1	1	1	0
30.5	signalling.G-proteins	4 (1.35%)	0	0	0	0	1	1	0	2
34.13	transport.peptides and oligopeptides	4 (1.35%)	0	1	0	1	1	0	0	1
15	metal handling	3 (1.01%)	1	0	0	1	0	0	0	1
26.10	misc.cytochrome P450	3 (1.01%)	0	0	0	0	1	1	0	1
26.27	misc.calcineurin-like phosphoesterase family protein	3 (1.01%)	0	0	0	1	0	1	1	0
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	3 (1.01%)	0	0	0	2	0	0	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	3 (1.01%)	0	0	0	0	1	1	0	1
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	3 (1.01%)	0	1	0	0	1	0	1	0
29.2.1.2.1.25	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25	3 (1.01%)	1	0	1	0	0	1	0	0
29.2.3	protein.synthesis.initiation	3 (1.01%)	0	0	0	1	0	0	1	1
29.3	protein.targeting	3 (1.01%)	0	0	1	0	1	0	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	3 (1.01%)	0	0	0	0	1	1	0	1
34.9	transport.metabolite transporters at the mitochondrial membrane	3 (1.01%)	0	0	0	2	0	0	0	1
1.1	PS.lightreaction	2 (0.67%)	0	0	0	1	0	0	1	0
1.3	PS.calvin cycle	2 (0.67%)	0	0	0	0	0	0	2	0
1.3.1	PS.calvin cycle.rubisco large subunit	2 (0.67%)	0	0	0	0	0	0	2	0
10.7	cell wall.modification	2 (0.67%)	0	0	0	1	1	0	0	0
11.9	lipid metabolism.lipid degradation	2 (0.67%)	0	1	0	0	0	0	1	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	2 (0.67%)	0	1	0	0	0	0	1	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	2 (0.67%)	0	1	0	0	0	0	1	0
13	amino acid metabolism	2 (0.67%)	0	0	0	0	1	1	0	0
13.2	amino acid metabolism.degradation	2 (0.67%)	0	0	0	0	1	1	0	0
15.2	metal handling.binding, chelation and storage	2 (0.67%)	0	0	0	1	0	0	0	1
16.10	secondary metabolism.simple phenols	2 (0.67%)	0	0	2	0	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	2 (0.67%)	0	0	0	0	2	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	2 (0.67%)	0	0	0	0	2	0	0	0
16.2.1.1	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	2 (0.67%)	0	0	0	0	2	0	0	0
17.2	hormone metabolism.auxin	2 (0.67%)	0	0	0	0	0	0	0	2
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.67%)	0	0	0	0	0	0	0	2
17.5	hormone metabolism.ethylene	2 (0.67%)	0	0	0	0	0	1	0	1
17.6	hormone metabolism.gibberelin	2 (0.67%)	1	0	0	0	0	1	0	0
20.1.7	stress.biotic.PR-proteins	2 (0.67%)	0	0	1	1	0	0	0	0
20.2.4	stress.abiotic.touch/wounding	2 (0.67%)	0	0	0	1	0	0	1	0
21	redox	2 (0.67%)	0	0	0	0	1	0	0	1
22	polyamine metabolism	2 (0.67%)	0	0	0	0	1	1	0	0
22.1	polyamine metabolism.synthesis	2 (0.67%)	0	0	0	0	1	1	0	0
27.2	RNA.transcription	2 (0.67%)	0	0	0	0	0	0	2	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	2 (0.67%)	0	0	0	0	1	1	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	2 (0.67%)	0	0	0	0	0	1	0	1
27.4	RNA.RNA binding	2 (0.67%)	0	1	0	0	0	1	0	0
28	DNA	2 (0.67%)	0	0	1	0	0	1	0	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	2 (0.67%)	0	0	0	0	1	0	0	1
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	2 (0.67%)	0	0	0	2	0	0	0	0
31.2	cell.division	2 (0.67%)	0	1	0	0	1	0	0	0
34.19	transport.Major Intrinsic Proteins	2 (0.67%)	1	0	0	1	0	0	0	0
34.19.3	transport.Major Intrinsic Proteins.NIP	2 (0.67%)	1	0	0	1	0	0	0	0
1.1.1	PS.lightreaction.photosystem II	1 (0.34%)	0	0	0	1	0	0	0	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.34%)	0	0	0	1	0	0	0	0
1.1.3	PS.lightreaction.cytochrome b6/f	1 (0.34%)	0	0	0	0	0	0	1	0
1.1.3.4	PS.lightreaction.cytochrome b6/f.apocytochrome f (CYF)	1 (0.34%)	0	0	0	0	0	0	1	0
6	gluconeogenesis / glyoxylate cycle	1 (0.34%)	0	0	0	0	0	1	0	0
7	OPP	1 (0.34%)	0	0	0	1	0	0	0	0
10.8.2	cell wall.pectin*esterases.acetyl esterase	1 (0.34%)	1	0	0	0	0	0	0	0
11.1.9	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	1 (0.34%)	0	0	0	1	0	0	0	0
13.2.2	amino acid metabolism.degradation.glutamate family	1 (0.34%)	0	0	0	0	0	1	0	0
13.2.2.3	amino acid metabolism.degradation.glutamate family.arginine	1 (0.34%)	0	0	0	0	0	1	0	0
13.2.4	amino acid metabolism.degradation.branched chain group	1 (0.34%)	0	0	0	0	1	0	0	0
13.2.4.4	amino acid metabolism.degradation.branched chain group.leucine	1 (0.34%)	0	0	0	0	1	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.34%)	0	0	0	0	0	1	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.34%)	0	0	0	0	0	0	0	1
17.6.1	hormone metabolism.gibberelin.synthesis-degradation	1 (0.34%)	1	0	0	0	0	0	0	0
17.6.1.13	hormone metabolism.gibberelin.synthesis-degradation.GA2 oxidase	1 (0.34%)	1	0	0	0	0	0	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	1 (0.34%)	0	0	0	0	0	1	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.34%)	0	0	0	0	1	0	0	0
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	1 (0.34%)	0	0	0	0	1	0	0	0
20.1.1	stress.biotic.respiratory burst	1 (0.34%)	0	0	0	0	1	0	0	0
20.2.1	stress.abiotic.heat	1 (0.34%)	0	0	0	0	0	1	0	0
20.2.3	stress.abiotic.drought/salt	1 (0.34%)	0	1	0	0	0	0	0	0
22.1.3	polyamine metabolism.synthesis.arginine decarboxylase	1 (0.34%)	0	0	0	0	0	1	0	0
22.1.6	polyamine metabolism.synthesis.spermidine synthase	1 (0.34%)	0	0	0	0	1	0	0	0
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	1 (0.34%)	0	0	1	0	0	0	0	0
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	1 (0.34%)	0	1	0	0	0	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.34%)	0	0	0	0	0	1	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.34%)	0	0	0	1	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.34%)	0	0	0	0	0	1	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.34%)	0	0	0	0	0	1	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.34%)	0	0	0	0	0	1	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	1 (0.34%)	0	0	0	0	1	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.34%)	0	0	0	0	1	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.34%)	0	0	0	0	1	0	0	0
27.3.73	RNA.regulation of transcription.Zn-finger(CCHC)	1 (0.34%)	0	0	0	0	0	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	1 (0.34%)	0	0	0	0	0	0	0	1
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.34%)	0	0	1	0	0	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.34%)	0	0	1	0	0	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.34%)	0	0	1	0	0	0	0	0
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	1 (0.34%)	0	0	0	0	1	0	0	0
29.2.1.2.2.80	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P0	1 (0.34%)	0	0	0	0	0	1	0	0
29.2.2	protein.synthesis.ribosome biogenesis	1 (0.34%)	1	0	0	0	0	0	0	0
29.3.2	protein.targeting.mitochondria	1 (0.34%)	0	0	1	0	0	0	0	0
29.3.3	protein.targeting.chloroplast	1 (0.34%)	0	0	0	0	1	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.34%)	0	0	0	0	0	0	0	1
29.3.4.3	protein.targeting.secretory pathway.vacuole	1 (0.34%)	0	0	0	0	0	0	0	1
29.5.1	protein.degradation.subtilases	1 (0.34%)	0	0	0	0	1	0	0	0
29.5.11.20	protein.degradation.ubiquitin.proteasom	1 (0.34%)	0	0	0	0	0	0	0	1
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.34%)	0	0	1	0	0	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.34%)	1	0	0	0	0	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.34%)	0	0	0	0	0	0	0	1
29.5.3	protein.degradation.cysteine protease	1 (0.34%)	0	0	0	0	1	0	0	0
29.5.4	protein.degradation.aspartate protease	1 (0.34%)	0	0	0	1	0	0	0	0
30.2.19	signalling.receptor kinases.legume-lectin	1 (0.34%)	1	0	0	0	0	0	0	0
31.2.5	cell.division.plastid	1 (0.34%)	0	0	0	0	1	0	0	0
6.4	gluconeogenesis / glyoxylate cycle.PEPCK	1 (0.34%)	0	0	0	0	0	1	0	0
7.2	OPP.non-reductive PP	1 (0.34%)	0	0	0	1	0	0	0	0
7.2.4	OPP.non-reductive PP.ribose 5-phosphate isomerase	1 (0.34%)	0	0	0	1	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.34%)	0	0	0	0	0	0	1	0
9.9	mitochondrial electron transport / ATP synthesis.F1-ATPase	1 (0.34%)	0	0	0	0	0	0	1	0
10.8	cell wall.pectin*esterases	1 (0.34%)	1	0	0	0	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.34%)	0	0	0	1	0	0	0	0
11.3	lipid metabolism.Phospholipid synthesis	1 (0.34%)	0	0	0	0	1	0	0	0
15.1	metal handling.acquisition	1 (0.34%)	1	0	0	0	0	0	0	0
17.7	hormone metabolism.jasmonate	1 (0.34%)	0	0	0	0	1	0	0	0
21.4	redox.glutaredoxins	1 (0.34%)	0	0	0	0	1	0	0	0
21.6	redox.dismutases and catalases	1 (0.34%)	0	0	0	0	0	0	0	1
26.13	misc.acid and other phosphatases	1 (0.34%)	0	0	0	0	0	0	0	1
26.18	misc.invertase/pectin methylesterase inhibitor family protein	1 (0.34%)	1	0	0	0	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.34%)	0	0	0	0	1	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.34%)	0	0	1	0	0	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.34%)	0	0	1	0	0	0	0	0
28.1	DNA.synthesis/chromatin structure	1 (0.34%)	0	0	1	0	0	0	0	0
28.99	DNA.unspecified	1 (0.34%)	0	0	0	0	0	1	0	0
29.6	protein.folding	1 (0.34%)	0	1	0	0	0	0	0	0
30.3	signalling.calcium	1 (0.34%)	0	1	0	0	0	0	0	0
31.3	cell.cycle	1 (0.34%)	0	0	0	0	0	1	0	0
31.5	cell.cell death	1 (0.34%)	0	0	0	0	0	0	1	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.34%)	0	0	0	0	1	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.34%)	1	0	0	0	0	0	0	0
34.98	transport.membrane system unknown	1 (0.34%)	0	0	0	0	0	1	0	0