PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_384
Name: SITEIOSPCNA
Description: Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation

#Associated genes: 208
#Associated MapMan terms: 100

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	51 (24.52%)	2	4	5	6	14	9	0	11
27.3	RNA.regulation of transcription	49 (23.56%)	2	4	4	6	13	9	0	11
29	protein	14 (6.73%)	1	0	4	2	4	1	0	2
33	development	13 (6.25%)	0	0	1	4	3	3	1	1
33.99	development.unspecified	12 (5.77%)	0	0	1	4	3	2	1	1
1	PS	10 (4.81%)	1	1	1	1	4	1	1	0
11	lipid metabolism	10 (4.81%)	0	0	1	1	5	1	1	1
1.1	PS.lightreaction	9 (4.33%)	0	1	1	1	4	1	1	0
34	transport	9 (4.33%)	0	0	1	2	2	2	0	2
1.1.1	PS.lightreaction.photosystem II	8 (3.85%)	0	1	1	1	4	0	1	0
11.1	lipid metabolism.FA synthesis and FA elongation	8 (3.85%)	0	0	1	0	4	1	1	1
11.1.7	lipid metabolism.FA synthesis and FA elongation.ACP thioesterase	7 (3.37%)	0	0	0	0	4	1	1	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	7 (3.37%)	0	0	2	2	0	2	0	1
17	hormone metabolism	6 (2.88%)	1	1	0	0	0	2	1	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	6 (2.88%)	0	0	0	2	2	1	0	1
29.4	protein.postranslational modification	6 (2.88%)	1	0	3	1	0	0	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	6 (2.88%)	0	1	1	0	2	1	0	1
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	5 (2.40%)	0	1	1	1	1	0	1	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	5 (2.40%)	0	0	0	0	2	3	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	5 (2.40%)	1	3	1	0	0	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	5 (2.40%)	0	0	0	0	1	1	0	3
29.5	protein.degradation	5 (2.40%)	0	0	1	1	1	1	0	1
26	misc	4 (1.92%)	0	1	2	0	0	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	4 (1.92%)	0	0	0	2	1	0	0	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (1.92%)	0	0	0	0	1	1	0	2
27.3.99	RNA.regulation of transcription.unclassified	4 (1.92%)	0	0	0	0	4	0	0	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	3 (1.44%)	0	0	0	0	3	0	0	0
17.5	hormone metabolism.ethylene	3 (1.44%)	1	1	0	0	0	1	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	3 (1.44%)	1	1	0	0	0	1	0	0
29.3	protein.targeting	3 (1.44%)	0	0	0	0	3	0	0	0
29.5.7	protein.degradation.metalloprotease	3 (1.44%)	0	0	1	1	0	0	0	1
30	signalling	3 (1.44%)	0	0	0	0	0	1	0	2
31	cell	3 (1.44%)	0	0	1	1	0	0	0	1
34.23	transport.hormones	3 (1.44%)	0	0	0	1	1	0	0	1
34.23.1	transport.hormones.auxin	3 (1.44%)	0	0	0	1	1	0	0	1
10	cell wall	2 (0.96%)	0	0	0	1	0	1	0	0
17.1	hormone metabolism.abscisic acid	2 (0.96%)	0	0	0	0	0	1	1	0
26.2	misc.UDP glucosyl and glucoronyl transferases	2 (0.96%)	0	0	2	0	0	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	2 (0.96%)	0	1	0	0	0	0	0	1
27.4	RNA.RNA binding	2 (0.96%)	0	0	1	0	1	0	0	0
29.3.1	protein.targeting.nucleus	2 (0.96%)	0	0	0	0	2	0	0	0
29.5.11	protein.degradation.ubiquitin	2 (0.96%)	0	0	0	0	1	1	0	0
31.1	cell.organisation	2 (0.96%)	0	0	1	1	0	0	0	0
34.15	transport.potassium	2 (0.96%)	0	0	0	0	0	1	0	1
1.1.2	PS.lightreaction.photosystem I	1 (0.48%)	0	0	0	0	0	1	0	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	1 (0.48%)	0	0	0	0	0	1	0	0
1.3	PS.calvin cycle	1 (0.48%)	1	0	0	0	0	0	0	0
1.3.6	PS.calvin cycle.aldolase	1 (0.48%)	1	0	0	0	0	0	0	0
10.1	cell wall.precursor synthesis	1 (0.48%)	0	0	0	0	0	1	0	0
10.1.10	cell wall.precursor synthesis.UDP-glucose 4,6-dehydratase	1 (0.48%)	0	0	0	0	0	1	0	0
10.6	cell wall.degradation	1 (0.48%)	0	0	0	1	0	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.48%)	0	0	0	1	0	0	0	0
11.1.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation	1 (0.48%)	0	0	1	0	0	0	0	0
11.1.1.2	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex	1 (0.48%)	0	0	1	0	0	0	0	0
11.1.1.2.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex.alpha Carboxyltransferase	1 (0.48%)	0	0	1	0	0	0	0	0
11.10	lipid metabolism.glycolipid synthesis	1 (0.48%)	0	0	0	0	1	0	0	0
11.10.3	lipid metabolism.glycolipid synthesis.UDP-sulfoquinovose synthase	1 (0.48%)	0	0	0	0	1	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.48%)	0	0	0	1	0	0	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.48%)	0	0	0	1	0	0	0	0
11.8.1.2	lipid metabolism.exotics (steroids, squalene etc).sphingolipids.serine C-palmitoyltransferase	1 (0.48%)	0	0	0	1	0	0	0	0
13	amino acid metabolism	1 (0.48%)	0	0	0	0	0	0	0	1
13.1	amino acid metabolism.synthesis	1 (0.48%)	0	0	0	0	0	0	0	1
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.48%)	0	0	0	0	0	0	0	1
13.1.6.1	amino acid metabolism.synthesis.aromatic aa.chorismate	1 (0.48%)	0	0	0	0	0	0	0	1
13.1.6.1.7	amino acid metabolism.synthesis.aromatic aa.chorismate.chorismate synthase	1 (0.48%)	0	0	0	0	0	0	0	1
15	metal handling	1 (0.48%)	0	0	1	0	0	0	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.48%)	0	0	0	0	0	0	1	0
17.1.1.1	hormone metabolism.abscisic acid.synthesis-degradation.synthesis	1 (0.48%)	0	0	0	0	0	0	1	0
17.1.1.1.1	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.zeaxanthin epoxidase	1 (0.48%)	0	0	0	0	0	0	1	0
17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	1 (0.48%)	0	0	0	0	1	0	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (0.48%)	0	0	0	0	0	1	0	0
17.4	hormone metabolism.cytokinin	1 (0.48%)	0	0	0	0	0	0	0	1
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.48%)	0	0	0	0	0	0	0	1
21	redox	1 (0.48%)	0	0	0	0	1	0	0	0
21.1	redox.thioredoxin	1 (0.48%)	0	0	0	0	1	0	0	0
26.10	misc.cytochrome P450	1 (0.48%)	0	1	0	0	0	0	0	0
26.1	misc.misc2	1 (0.48%)	0	0	0	0	0	1	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.48%)	0	0	0	0	1	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.48%)	0	0	0	0	0	1	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.48%)	0	0	0	0	0	0	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.48%)	1	0	0	0	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.48%)	0	0	0	0	1	0	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.48%)	0	0	0	0	0	0	0	1
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.48%)	0	0	1	0	0	0	0	0
28	DNA	1 (0.48%)	0	0	1	0	0	0	0	0
28.1	DNA.synthesis/chromatin structure	1 (0.48%)	0	0	1	0	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.48%)	0	0	1	0	0	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.48%)	0	0	0	0	1	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.48%)	0	0	0	0	1	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.48%)	0	0	0	1	0	0	0	0
30.2	signalling.receptor kinases	1 (0.48%)	0	0	0	0	0	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	1 (0.48%)	0	0	0	0	0	0	0	1
30.3	signalling.calcium	1 (0.48%)	0	0	0	0	0	1	0	0
30.5	signalling.G-proteins	1 (0.48%)	0	0	0	0	0	0	0	1
31.4	cell.vesicle transport	1 (0.48%)	0	0	0	0	0	0	0	1
33.1	development.storage proteins	1 (0.48%)	0	0	0	0	0	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.48%)	0	0	1	0	0	0	0	0
34.3	transport.amino acids	1 (0.48%)	0	0	0	0	0	1	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.48%)	0	0	0	1	0	0	0	0
34.99	transport.misc	1 (0.48%)	0	0	0	0	1	0	0	0