PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_319
Name: AtTINY2
Description: Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana

#Associated genes: 9
#Associated GO terms: 143

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	cme	ppe	sly	stu	vvi
GO:0005488	binding	6 (66.67%)	1	2	1	1	1
GO:1901363	heterocyclic compound binding	6 (66.67%)	1	2	1	1	1
GO:0097159	organic cyclic compound binding	6 (66.67%)	1	2	1	1	1
GO:0003824	catalytic activity	5 (55.56%)	1	1	1	1	1
GO:0003677	DNA binding	3 (33.33%)	0	1	1	1	0
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	3 (33.33%)	1	1	0	0	1
GO:0043168	anion binding	3 (33.33%)	1	1	0	0	1
GO:0050662	coenzyme binding	3 (33.33%)	1	1	0	0	1
GO:0048037	cofactor binding	3 (33.33%)	1	1	0	0	1
GO:0019139	cytokinin dehydrogenase activity	3 (33.33%)	1	1	0	0	1
GO:0050660	flavin adenine dinucleotide binding	3 (33.33%)	1	1	0	0	1
GO:0043167	ion binding	3 (33.33%)	1	1	0	0	1
GO:0003676	nucleic acid binding	3 (33.33%)	0	1	1	1	0
GO:1901265	nucleoside phosphate binding	3 (33.33%)	1	1	0	0	1
GO:0000166	nucleotide binding	3 (33.33%)	1	1	0	0	1
GO:0016491	oxidoreductase activity	3 (33.33%)	1	1	0	0	1
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	3 (33.33%)	1	1	0	0	1
GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	3 (33.33%)	1	1	0	0	1
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3 (33.33%)	1	1	0	0	1
GO:0036094	small molecule binding	3 (33.33%)	1	1	0	0	1
GO:0008022	protein C-terminus binding	2 (22.22%)	0	0	1	1	0
GO:0005515	protein binding	2 (22.22%)	0	0	1	1	0
GO:0001071	nucleic acid binding transcription factor activity	1 (11.11%)	0	1	0	0	0
GO:0003700	sequence-specific DNA binding transcription factor activity	1 (11.11%)	0	1	0	0	0

Biological Process (back to top)

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GO	Description	#Associated genes	cme	ppe	sly	stu	vvi
GO:0065007	biological regulation	6 (66.67%)	1	2	1	1	1
GO:0006725	cellular aromatic compound metabolic process	6 (66.67%)	1	2	1	1	1
GO:0044237	cellular metabolic process	6 (66.67%)	1	2	1	1	1
GO:0009987	cellular process	6 (66.67%)	1	2	1	1	1
GO:0046483	heterocycle metabolic process	6 (66.67%)	1	2	1	1	1
GO:0008152	metabolic process	6 (66.67%)	1	2	1	1	1
GO:0006807	nitrogen compound metabolic process	6 (66.67%)	1	2	1	1	1
GO:0071704	organic substance metabolic process	6 (66.67%)	1	2	1	1	1
GO:0044699	single-organism process	4 (44.44%)	1	2	0	0	1
GO:0032774	RNA biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0016070	RNA metabolic process	3 (33.33%)	0	1	1	1	0
GO:0009308	amine metabolic process	3 (33.33%)	1	1	0	0	1
GO:0019438	aromatic compound biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0009058	biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0009056	catabolic process	3 (33.33%)	1	1	0	0	1
GO:0044249	cellular biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0034754	cellular hormone metabolic process	3 (33.33%)	1	1	0	0	1
GO:0034645	cellular macromolecule biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0044260	cellular macromolecule metabolic process	3 (33.33%)	0	1	1	1	0
GO:0044271	cellular nitrogen compound biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0034641	cellular nitrogen compound metabolic process	3 (33.33%)	0	1	1	1	0
GO:0009823	cytokinin catabolic process	3 (33.33%)	1	1	0	0	1
GO:0009690	cytokinin metabolic process	3 (33.33%)	1	1	0	0	1
GO:0010467	gene expression	3 (33.33%)	0	1	1	1	0
GO:0018130	heterocycle biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0042447	hormone catabolic process	3 (33.33%)	1	1	0	0	1
GO:0042445	hormone metabolic process	3 (33.33%)	1	1	0	0	1
GO:0009059	macromolecule biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0043170	macromolecule metabolic process	3 (33.33%)	0	1	1	1	0
GO:0090304	nucleic acid metabolic process	3 (33.33%)	0	1	1	1	0
GO:0034654	nucleobase-containing compound biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0006139	nucleobase-containing compound metabolic process	3 (33.33%)	0	1	1	1	0
GO:1901362	organic cyclic compound biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:1901360	organic cyclic compound metabolic process	3 (33.33%)	0	1	1	1	0
GO:1901576	organic substance biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:1901564	organonitrogen compound metabolic process	3 (33.33%)	1	1	0	0	1
GO:0055114	oxidation-reduction process	3 (33.33%)	1	1	0	0	1
GO:0044238	primary metabolic process	3 (33.33%)	0	1	1	1	0
GO:2001141	regulation of RNA biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0051252	regulation of RNA metabolic process	3 (33.33%)	0	1	1	1	0
GO:0050789	regulation of biological process	3 (33.33%)	0	1	1	1	0
GO:0065008	regulation of biological quality	3 (33.33%)	1	1	0	0	1
GO:0009889	regulation of biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0031326	regulation of cellular biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0031323	regulation of cellular metabolic process	3 (33.33%)	0	1	1	1	0
GO:0050794	regulation of cellular process	3 (33.33%)	0	1	1	1	0
GO:0010468	regulation of gene expression	3 (33.33%)	0	1	1	1	0
GO:0010817	regulation of hormone levels	3 (33.33%)	1	1	0	0	1
GO:0010556	regulation of macromolecule biosynthetic process	3 (33.33%)	0	1	1	1	0
GO:0060255	regulation of macromolecule metabolic process	3 (33.33%)	0	1	1	1	0
GO:0019222	regulation of metabolic process	3 (33.33%)	0	1	1	1	0
GO:0051171	regulation of nitrogen compound metabolic process	3 (33.33%)	0	1	1	1	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	3 (33.33%)	0	1	1	1	0
GO:0080090	regulation of primary metabolic process	3 (33.33%)	0	1	1	1	0
GO:0006355	regulation of transcription, DNA-dependent	3 (33.33%)	0	1	1	1	0
GO:0044710	single-organism metabolic process	3 (33.33%)	1	1	0	0	1
GO:0006351	transcription, DNA-templated	3 (33.33%)	0	1	1	1	0
GO:0006352	DNA-dependent transcription, initiation	2 (22.22%)	0	0	1	1	0
GO:0015979	photosynthesis	2 (22.22%)	0	0	1	1	0
GO:0051254	positive regulation of RNA metabolic process	2 (22.22%)	0	0	1	1	0
GO:0048518	positive regulation of biological process	2 (22.22%)	0	0	1	1	0
GO:0009891	positive regulation of biosynthetic process	2 (22.22%)	0	0	1	1	0
GO:0031328	positive regulation of cellular biosynthetic process	2 (22.22%)	0	0	1	1	0
GO:0031325	positive regulation of cellular metabolic process	2 (22.22%)	0	0	1	1	0
GO:0048522	positive regulation of cellular process	2 (22.22%)	0	0	1	1	0
GO:0010628	positive regulation of gene expression	2 (22.22%)	0	0	1	1	0
GO:0010557	positive regulation of macromolecule biosynthetic process	2 (22.22%)	0	0	1	1	0
GO:0010604	positive regulation of macromolecule metabolic process	2 (22.22%)	0	0	1	1	0
GO:0009893	positive regulation of metabolic process	2 (22.22%)	0	0	1	1	0
GO:0051173	positive regulation of nitrogen compound metabolic process	2 (22.22%)	0	0	1	1	0
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	2 (22.22%)	0	0	1	1	0
GO:0045893	positive regulation of transcription, DNA-dependent	2 (22.22%)	0	0	1	1	0
GO:0006366	transcription from RNA polymerase II promoter	2 (22.22%)	0	0	1	1	0
GO:0006367	transcription initiation from RNA polymerase II promoter	2 (22.22%)	0	0	1	1	0
GO:0007154	cell communication	1 (11.11%)	0	1	0	0	0
GO:0070887	cellular response to chemical stimulus	1 (11.11%)	0	1	0	0	0
GO:0071495	cellular response to endogenous stimulus	1 (11.11%)	0	1	0	0	0
GO:0071369	cellular response to ethylene stimulus	1 (11.11%)	0	1	0	0	0
GO:0032870	cellular response to hormone stimulus	1 (11.11%)	0	1	0	0	0
GO:0071310	cellular response to organic substance	1 (11.11%)	0	1	0	0	0
GO:0051716	cellular response to stimulus	1 (11.11%)	0	1	0	0	0
GO:0009873	ethylene mediated signaling pathway	1 (11.11%)	0	1	0	0	0
GO:0009755	hormone-mediated signaling pathway	1 (11.11%)	0	1	0	0	0
GO:0000160	phosphorelay signal transduction system	1 (11.11%)	0	1	0	0	0
GO:0042221	response to chemical	1 (11.11%)	0	1	0	0	0
GO:0009719	response to endogenous stimulus	1 (11.11%)	0	1	0	0	0
GO:0009723	response to ethylene	1 (11.11%)	0	1	0	0	0
GO:0009725	response to hormone	1 (11.11%)	0	1	0	0	0
GO:0010033	response to organic substance	1 (11.11%)	0	1	0	0	0
GO:0050896	response to stimulus	1 (11.11%)	0	1	0	0	0
GO:0007165	signal transduction	1 (11.11%)	0	1	0	0	0
GO:0023052	signaling	1 (11.11%)	0	1	0	0	0
GO:0044700	single organism signaling	1 (11.11%)	0	1	0	0	0
GO:0044763	single-organism cellular process	1 (11.11%)	0	1	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	sly	stu
GO:0005623	cell	4 (44.44%)	2	2
GO:0044464	cell part	4 (44.44%)	2	2
GO:0009507	chloroplast	4 (44.44%)	2	2
GO:0005737	cytoplasm	4 (44.44%)	2	2
GO:0044444	cytoplasmic part	4 (44.44%)	2	2
GO:0005622	intracellular	4 (44.44%)	2	2
GO:0043231	intracellular membrane-bounded organelle	4 (44.44%)	2	2
GO:0043229	intracellular organelle	4 (44.44%)	2	2
GO:0044424	intracellular part	4 (44.44%)	2	2
GO:0043227	membrane-bounded organelle	4 (44.44%)	2	2
GO:0043226	organelle	4 (44.44%)	2	2
GO:0009536	plastid	4 (44.44%)	2	2
GO:0016021	integral to membrane	2 (22.22%)	1	1
GO:0031224	intrinsic to membrane	2 (22.22%)	1	1
GO:0032991	macromolecular complex	2 (22.22%)	1	1
GO:0016020	membrane	2 (22.22%)	1	1
GO:0044425	membrane part	2 (22.22%)	1	1
GO:0005634	nucleus	2 (22.22%)	1	1
GO:0034357	photosynthetic membrane	2 (22.22%)	1	1
GO:0009521	photosystem	2 (22.22%)	1	1
GO:0009522	photosystem I	2 (22.22%)	1	1
GO:0043234	protein complex	2 (22.22%)	1	1
GO:0009579	thylakoid	2 (22.22%)	1	1
GO:0044436	thylakoid part	2 (22.22%)	1	1