PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_187
Name: AT1BOX
Description: AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element

#Associated genes: 117
#Associated MapMan terms: 94

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
29	protein	15 (12.82%)	3	1	2	6	2	0	0	1
26	misc	10 (8.55%)	1	3	0	3	0	0	0	3
30	signalling	10 (8.55%)	0	1	3	0	3	1	0	2
27	RNA	9 (7.69%)	0	0	1	6	2	0	0	0
17	hormone metabolism	7 (5.98%)	1	1	0	3	1	0	0	1
29.4	protein.postranslational modification	7 (5.98%)	2	0	1	2	1	0	0	1
34	transport	7 (5.98%)	1	0	1	3	1	1	0	0
27.3	RNA.regulation of transcription	6 (5.13%)	0	0	0	5	1	0	0	0
30.2	signalling.receptor kinases	6 (5.13%)	0	0	3	0	1	1	0	1
17.5	hormone metabolism.ethylene	5 (4.27%)	0	1	0	2	1	0	0	1
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	5 (4.27%)	0	1	0	2	1	0	0	1
26.2	misc.UDP glucosyl and glucoronyl transferases	4 (3.42%)	0	2	0	0	0	0	0	2
33	development	4 (3.42%)	1	0	0	2	0	1	0	0
33.99	development.unspecified	4 (3.42%)	1	0	0	2	0	1	0	0
16	secondary metabolism	3 (2.56%)	0	1	1	1	0	0	0	0
20	stress	3 (2.56%)	1	0	1	0	1	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	3 (2.56%)	1	0	0	1	0	0	0	1
29.3	protein.targeting	3 (2.56%)	1	0	0	1	1	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	3 (2.56%)	0	0	2	0	1	0	0	0
30.5	signalling.G-proteins	3 (2.56%)	0	1	0	0	2	0	0	0
31	cell	3 (2.56%)	0	0	0	1	2	0	0	0
16.1	secondary metabolism.isoprenoids	2 (1.71%)	0	0	1	1	0	0	0	0
20.2	stress.abiotic	2 (1.71%)	1	0	0	0	1	0	0	0
20.2.1	stress.abiotic.heat	2 (1.71%)	1	0	0	0	1	0	0	0
23	nucleotide metabolism	2 (1.71%)	0	0	2	0	0	0	0	0
23.3	nucleotide metabolism.salvage	2 (1.71%)	0	0	2	0	0	0	0	0
23.3.3	nucleotide metabolism.salvage.NUDIX hydrolases	2 (1.71%)	0	0	2	0	0	0	0	0
26.7	misc.oxidases - copper, flavone etc	2 (1.71%)	0	1	0	1	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (1.71%)	0	0	0	1	1	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	2 (1.71%)	0	0	0	2	0	0	0	0
27.4	RNA.RNA binding	2 (1.71%)	0	0	0	1	1	0	0	0
28	DNA	2 (1.71%)	0	1	0	0	0	0	1	0
29.3.4	protein.targeting.secretory pathway	2 (1.71%)	0	0	0	1	1	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	2 (1.71%)	0	0	0	1	1	0	0	0
29.5	protein.degradation	2 (1.71%)	0	0	1	1	0	0	0	0
29.5.3	protein.degradation.cysteine protease	2 (1.71%)	0	0	1	1	0	0	0	0
29.6	protein.folding	2 (1.71%)	0	0	0	2	0	0	0	0
30.2.99	signalling.receptor kinases.misc	2 (1.71%)	0	0	1	0	0	0	0	1
31.3	cell.cycle	2 (1.71%)	0	0	0	1	1	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	2 (1.71%)	0	0	0	1	1	0	0	0
34.99	transport.misc	2 (1.71%)	1	0	0	1	0	0	0	0
1	PS	1 (0.85%)	0	0	0	0	0	0	0	1
1.1	PS.lightreaction	1 (0.85%)	0	0	0	0	0	0	0	1
1.1.1	PS.lightreaction.photosystem II	1 (0.85%)	0	0	0	0	0	0	0	1
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.85%)	0	0	0	0	0	0	0	1
13	amino acid metabolism	1 (0.85%)	0	0	0	1	0	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.85%)	0	0	0	1	0	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.85%)	0	0	0	1	0	0	0	0
13.1.6.4	amino acid metabolism.synthesis.aromatic aa.tyrosine	1 (0.85%)	0	0	0	1	0	0	0	0
13.1.6.4.1	amino acid metabolism.synthesis.aromatic aa.tyrosine.arogenate dehydrogenase & prephenate dehydrogenase	1 (0.85%)	0	0	0	1	0	0	0	0
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	1 (0.85%)	0	0	0	1	0	0	0	0
16.1.1.10	secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase	1 (0.85%)	0	0	0	1	0	0	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.85%)	0	0	1	0	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.85%)	0	1	0	0	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.85%)	0	1	0	0	0	0	0	0
16.2.1.10	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	1 (0.85%)	0	1	0	0	0	0	0	0
17.2	hormone metabolism.auxin	1 (0.85%)	0	0	0	1	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.85%)	0	0	0	1	0	0	0	0
17.8	hormone metabolism.salicylic acid	1 (0.85%)	1	0	0	0	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	1 (0.85%)	1	0	0	0	0	0	0	0
19	tetrapyrrole synthesis	1 (0.85%)	0	0	0	0	0	0	1	0
19.99	tetrapyrrole synthesis.unspecified	1 (0.85%)	0	0	0	0	0	0	1	0
20.1	stress.biotic	1 (0.85%)	0	0	1	0	0	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.85%)	0	0	1	0	0	0	0	0
24	Biodegradation of Xenobiotics	1 (0.85%)	0	0	0	1	0	0	0	0
24.2	Biodegradation of Xenobiotics.lactoylglutathione lyase	1 (0.85%)	0	0	0	1	0	0	0	0
26.28	misc.GDSL-motif lipase	1 (0.85%)	0	0	0	1	0	0	0	0
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	1 (0.85%)	1	0	0	0	0	0	0	0
27.1	RNA.processing	1 (0.85%)	0	0	1	0	0	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.85%)	0	0	1	0	0	0	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	1 (0.85%)	0	0	0	1	0	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.85%)	0	0	0	1	0	0	0	0
28.1	DNA.synthesis/chromatin structure	1 (0.85%)	0	0	0	0	0	0	1	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.85%)	0	0	0	0	0	0	1	0
28.2	DNA.repair	1 (0.85%)	0	1	0	0	0	0	0	0
29.1	protein.aa activation	1 (0.85%)	0	1	0	0	0	0	0	0
29.1.30	protein.aa activation.pseudouridylate synthase	1 (0.85%)	0	1	0	0	0	0	0	0
29.2.1.2.2.3	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L3	1 (0.85%)	0	0	1	0	0	0	0	0
29.2.1.2.2.80	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P0	1 (0.85%)	0	0	0	0	1	0	0	0
29.3.3	protein.targeting.chloroplast	1 (0.85%)	1	0	0	0	0	0	0	0
29.4.1	protein.postranslational modification.kinase	1 (0.85%)	0	0	0	0	1	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.85%)	0	0	0	0	1	0	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	1 (0.85%)	0	0	0	0	0	0	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.85%)	0	0	1	0	0	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.85%)	0	0	0	0	0	1	0	0
30.2.24	signalling.receptor kinases.S-locus glycoprotein like	1 (0.85%)	0	0	1	0	0	0	0	0
30.8	signalling.misc	1 (0.85%)	0	0	0	0	0	0	0	1
31.1	cell.organisation	1 (0.85%)	0	0	0	0	1	0	0	0
34.14	transport.unspecified cations	1 (0.85%)	0	0	0	1	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.85%)	0	0	0	0	1	0	0	0
34.19	transport.Major Intrinsic Proteins	1 (0.85%)	0	0	0	0	0	1	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	1 (0.85%)	0	0	0	0	0	1	0	0
34.22	transport.cyclic nucleotide or calcium regulated channels	1 (0.85%)	0	0	1	0	0	0	0	0
34.3	transport.amino acids	1 (0.85%)	0	0	0	1	0	0	0	0