PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_143
Name: VND6
Description: Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation

#Associated genes: 358
#Associated MapMan terms: 118

Show species without binding site experiments

Click table-header(s) to enable sorting

MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	61 (17.04%)	4	7	1	18	9	12	4	6
27.3	RNA.regulation of transcription	56 (15.64%)	4	6	1	18	9	10	3	5
29	protein	22 (6.15%)	2	2	1	5	6	2	1	3
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	21 (5.87%)	3	5	1	6	4	1	1	0
26	misc	19 (5.31%)	3	1	4	2	2	5	1	1
29.5	protein.degradation	17 (4.75%)	2	1	0	2	6	2	1	3
17	hormone metabolism	13 (3.63%)	2	2	1	3	2	2	1	0
30	signalling	13 (3.63%)	1	0	3	2	3	2	0	2
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	10 (2.79%)	0	0	0	5	1	2	1	1
31	cell	10 (2.79%)	1	1	0	1	2	2	1	2
31.1	cell.organisation	10 (2.79%)	1	1	0	1	2	2	1	2
10	cell wall	9 (2.51%)	1	0	1	2	0	3	1	1
17.2	hormone metabolism.auxin	9 (2.51%)	1	1	1	2	2	1	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	9 (2.51%)	1	1	1	2	2	1	1	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	9 (2.51%)	0	0	2	4	0	2	0	1
30.2	signalling.receptor kinases	9 (2.51%)	1	0	2	2	2	1	0	1
33	development	9 (2.51%)	0	1	2	3	0	1	0	2
11	lipid metabolism	8 (2.23%)	0	1	2	0	0	2	2	1
33.99	development.unspecified	8 (2.23%)	0	1	1	3	0	1	0	2
29.5.3	protein.degradation.cysteine protease	7 (1.96%)	1	1	0	0	2	1	1	1
34	transport	7 (1.96%)	0	0	0	1	2	3	0	1
11.9	lipid metabolism.lipid degradation	6 (1.68%)	0	1	2	0	0	0	2	1
11.9.2	lipid metabolism.lipid degradation.lipases	6 (1.68%)	0	1	2	0	0	0	2	1
27.3.99	RNA.regulation of transcription.unclassified	6 (1.68%)	0	0	0	2	2	1	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	6 (1.68%)	0	0	1	2	2	1	0	0
10.6	cell wall.degradation	5 (1.40%)	1	0	1	1	0	1	1	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	5 (1.40%)	0	1	2	0	0	0	1	1
26.2	misc.UDP glucosyl and glucoronyl transferases	5 (1.40%)	1	0	1	0	1	1	0	1
28	DNA	5 (1.40%)	0	1	0	0	1	2	0	1
28.1	DNA.synthesis/chromatin structure	5 (1.40%)	0	1	0	0	1	2	0	1
1	PS	4 (1.12%)	0	0	0	1	0	0	0	3
1.1	PS.lightreaction	4 (1.12%)	0	0	0	1	0	0	0	3
16	secondary metabolism	4 (1.12%)	0	1	0	0	2	0	0	1
26.12	misc.peroxidases	4 (1.12%)	0	0	1	2	0	0	1	0
26.24	misc.GCN5-related N-acetyltransferase	4 (1.12%)	1	1	1	0	0	1	0	0
27.1	RNA.processing	4 (1.12%)	0	1	0	0	0	2	0	1
1.1.1	PS.lightreaction.photosystem II	3 (0.84%)	0	0	0	0	0	0	0	3
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	3 (0.84%)	0	0	0	0	0	0	0	3
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	3 (0.84%)	0	0	1	1	0	0	1	0
10.7	cell wall.modification	3 (0.84%)	0	0	0	1	0	1	0	1
16.10	secondary metabolism.simple phenols	3 (0.84%)	0	1	0	0	1	0	0	1
20	stress	3 (0.84%)	0	0	1	2	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (0.84%)	0	0	0	2	0	1	0	0
29.4	protein.postranslational modification	3 (0.84%)	0	1	0	2	0	0	0	0
29.5.5	protein.degradation.serine protease	3 (0.84%)	0	0	0	1	1	0	0	1
34.16	transport.ABC transporters and multidrug resistance systems	3 (0.84%)	0	0	0	0	2	1	0	0
17.4	hormone metabolism.cytokinin	2 (0.56%)	0	0	0	1	0	1	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	2 (0.56%)	0	0	0	1	0	1	0	0
19	tetrapyrrole synthesis	2 (0.56%)	0	0	0	0	2	0	0	0
20.2	stress.abiotic	2 (0.56%)	0	0	0	2	0	0	0	0
20.2.99	stress.abiotic.unspecified	2 (0.56%)	0	0	0	2	0	0	0	0
26.7	misc.oxidases - copper, flavone etc	2 (0.56%)	1	0	0	0	1	0	0	0
27.1.1	RNA.processing.splicing	2 (0.56%)	0	0	0	0	0	1	0	1
27.1.2	RNA.processing.RNA helicase	2 (0.56%)	0	1	0	0	0	1	0	0
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	2 (0.56%)	0	0	0	0	0	1	0	1
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	2 (0.56%)	0	0	0	2	0	0	0	0
29.5.1	protein.degradation.subtilases	2 (0.56%)	0	0	0	0	1	0	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.56%)	0	0	0	0	0	2	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	2 (0.56%)	0	0	0	0	1	0	0	1
30.3	signalling.calcium	2 (0.56%)	0	0	0	0	0	1	0	1
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.28%)	0	0	0	1	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.28%)	0	0	0	0	0	1	0	0
10.5.5	cell wall.cell wall proteins.RGP	1 (0.28%)	0	0	0	0	0	1	0	0
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.28%)	0	0	0	0	0	1	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.28%)	1	0	0	0	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.28%)	0	0	0	0	0	1	0	0
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	1 (0.28%)	0	0	0	0	0	1	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.28%)	0	0	0	0	0	1	0	0
11.8.3	lipid metabolism.exotics (steroids, squalene etc).UDP-glucose:sterol glucosyltransferase	1 (0.28%)	0	0	0	0	0	1	0	0
11.9.2.2	lipid metabolism.lipid degradation.lipases.acylglycerol lipase	1 (0.28%)	0	0	0	0	0	0	1	0
16.2	secondary metabolism.phenylpropanoids	1 (0.28%)	0	0	0	0	1	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.28%)	1	0	0	0	0	0	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.28%)	1	0	0	0	0	0	0	0
17.8	hormone metabolism.salicylic acid	1 (0.28%)	0	1	0	0	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	1 (0.28%)	0	1	0	0	0	0	0	0
18	Co-factor and vitamine metabolism	1 (0.28%)	0	0	0	0	0	0	0	1
18.7	Co-factor and vitamine metabolism.iron-sulphur clusters	1 (0.28%)	0	0	0	0	0	0	0	1
19.12	tetrapyrrole synthesis.magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase	1 (0.28%)	0	0	0	0	1	0	0	0
19.4	tetrapyrrole synthesis.ALA dehydratase	1 (0.28%)	0	0	0	0	1	0	0	0
20.1	stress.biotic	1 (0.28%)	0	0	1	0	0	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.28%)	0	0	1	0	0	0	0	0
23	nucleotide metabolism	1 (0.28%)	1	0	0	0	0	0	0	0
23.1	nucleotide metabolism.synthesis	1 (0.28%)	1	0	0	0	0	0	0	0
23.1.2	nucleotide metabolism.synthesis.purine	1 (0.28%)	1	0	0	0	0	0	0	0
23.1.2.7	nucleotide metabolism.synthesis.purine.SAICAR synthetase	1 (0.28%)	1	0	0	0	0	0	0	0
26.10	misc.cytochrome P450	1 (0.28%)	0	0	1	0	0	0	0	0
26.13	misc.acid and other phosphatases	1 (0.28%)	0	0	0	0	0	1	0	0
26.28	misc.GDSL-motif lipase	1 (0.28%)	0	0	0	0	0	1	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.28%)	0	0	0	0	0	1	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.28%)	0	0	0	0	0	1	0	0
27.2	RNA.transcription	1 (0.28%)	0	0	0	0	0	0	1	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.28%)	0	0	0	0	0	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.28%)	0	0	0	1	0	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	1 (0.28%)	1	0	0	0	0	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	1 (0.28%)	0	0	0	0	0	0	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.28%)	0	0	0	0	0	1	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.28%)	0	1	0	0	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.28%)	0	0	0	0	0	1	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.28%)	0	0	0	0	0	0	1	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.28%)	0	0	0	0	0	1	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.80	RNA.regulation of transcription.zf-HD	1 (0.28%)	0	0	0	0	0	0	0	1
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.28%)	0	0	0	0	0	1	0	0
29.1	protein.aa activation	1 (0.28%)	0	0	0	1	0	0	0	0
29.4.1	protein.postranslational modification.kinase	1 (0.28%)	0	1	0	0	0	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.28%)	0	1	0	0	0	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.28%)	0	0	0	0	1	0	0	0
29.6	protein.folding	1 (0.28%)	0	0	1	0	0	0	0	0
30.10	signalling.phosphorelay	1 (0.28%)	0	0	1	0	0	0	0	0
30.11	signalling.light	1 (0.28%)	0	0	0	0	1	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.28%)	0	0	1	0	0	0	0	0
30.2.5	signalling.receptor kinases.leucine rich repeat V	1 (0.28%)	1	0	0	0	0	0	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.28%)	0	0	1	0	0	0	0	0
34.12	transport.metal	1 (0.28%)	0	0	0	0	0	1	0	0
34.2	transport.sugars	1 (0.28%)	0	0	0	1	0	0	0	0
34.8	transport.metabolite transporters at the envelope membrane	1 (0.28%)	0	0	0	0	0	0	0	1
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.28%)	0	0	0	0	0	1	0	0