Gene Ontology terms associated with a binding site

Binding site
Motif_105
Name
AGL3 binding site motif
Description
The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein
#Associated genes
18
#Associated GO terms
240
 
Biological Process
Molecular Function
Cellular Component






Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding13 (72.22%)1001212123
GO:0003677DNA binding12 (66.67%)1001212113
GO:1901363heterocyclic compound binding12 (66.67%)1001212113
GO:0003676nucleic acid binding12 (66.67%)1001212113
GO:0097159organic cyclic compound binding12 (66.67%)1001212113
GO:0001071nucleic acid binding transcription factor activity11 (61.11%)1001112113
GO:0003700sequence-specific DNA binding transcription factor activity11 (61.11%)1001112113
GO:0005515protein binding8 (44.44%)0000112121
GO:0046983protein dimerization activity7 (38.89%)0000112111
GO:0043565sequence-specific DNA binding6 (33.33%)0001102002
GO:0003824catalytic activity2 (11.11%)0000100001
GO:0016491oxidoreductase activity2 (11.11%)0000100001
GO:0004029aldehyde dehydrogenase (NAD) activity1 (5.56%)0000100000
GO:0004030aldehyde dehydrogenase [NAD(P)+] activity1 (5.56%)0000100000
GO:0009055electron carrier activity1 (5.56%)0000000001
GO:0016903oxidoreductase activity, acting on the aldehyde or oxo group of donors1 (5.56%)0000100000
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1 (5.56%)0000100000
GO:0000975regulatory region DNA binding1 (5.56%)1000000000
GO:0001067regulatory region nucleic acid binding1 (5.56%)1000000000
GO:0044212transcription regulatory region DNA binding1 (5.56%)1000000000

Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell8 (44.44%)1000211111
GO:0044464cell part8 (44.44%)1000211111
GO:0005622intracellular8 (44.44%)1000211111
GO:0043231intracellular membrane-bounded organelle8 (44.44%)1000211111
GO:0043229intracellular organelle8 (44.44%)1000211111
GO:0044424intracellular part8 (44.44%)1000211111
GO:0043227membrane-bounded organelle8 (44.44%)1000211111
GO:0043226organelle8 (44.44%)1000211111
GO:0005634nucleus7 (38.89%)1000111111
GO:0016020membrane2 (11.11%)0000100001
GO:0005794Golgi apparatus1 (5.56%)0000100000
GO:0030054cell junction1 (5.56%)0000100000
GO:0005911cell-cell junction1 (5.56%)0000100000
GO:0005737cytoplasm1 (5.56%)0000100000
GO:0044444cytoplasmic part1 (5.56%)0000100000
GO:0005783endoplasmic reticulum1 (5.56%)0000100000
GO:0009506plasmodesma1 (5.56%)0000100000
GO:0055044symplast1 (5.56%)0000100000
GO:0005773vacuole1 (5.56%)0000100000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0044237cellular metabolic process15 (83.33%)1001312124
GO:0009987cellular process15 (83.33%)1001312124
GO:0008152metabolic process15 (83.33%)1001312124
GO:0071704organic substance metabolic process14 (77.78%)1001312123
GO:0032774RNA biosynthetic process13 (72.22%)1001212123
GO:0016070RNA metabolic process13 (72.22%)1001212123
GO:0019438aromatic compound biosynthetic process13 (72.22%)1001212123
GO:0065007biological regulation13 (72.22%)1001212123
GO:0009058biosynthetic process13 (72.22%)1001212123
GO:0006725cellular aromatic compound metabolic process13 (72.22%)1001212123
GO:0044249cellular biosynthetic process13 (72.22%)1001212123
GO:0034645cellular macromolecule biosynthetic process13 (72.22%)1001212123
GO:0044260cellular macromolecule metabolic process13 (72.22%)1001212123
GO:0044271cellular nitrogen compound biosynthetic process13 (72.22%)1001212123
GO:0034641cellular nitrogen compound metabolic process13 (72.22%)1001212123
GO:0010467gene expression13 (72.22%)1001212123
GO:0018130heterocycle biosynthetic process13 (72.22%)1001212123
GO:0046483heterocycle metabolic process13 (72.22%)1001212123
GO:0009059macromolecule biosynthetic process13 (72.22%)1001212123
GO:0043170macromolecule metabolic process13 (72.22%)1001212123
GO:0006807nitrogen compound metabolic process13 (72.22%)1001212123
GO:0090304nucleic acid metabolic process13 (72.22%)1001212123
GO:0034654nucleobase-containing compound biosynthetic process13 (72.22%)1001212123
GO:0006139nucleobase-containing compound metabolic process13 (72.22%)1001212123
GO:1901362organic cyclic compound biosynthetic process13 (72.22%)1001212123
GO:1901360organic cyclic compound metabolic process13 (72.22%)1001212123
GO:1901576organic substance biosynthetic process13 (72.22%)1001212123
GO:0044238primary metabolic process13 (72.22%)1001212123
GO:2001141regulation of RNA biosynthetic process13 (72.22%)1001212123
GO:0051252regulation of RNA metabolic process13 (72.22%)1001212123
GO:0050789regulation of biological process13 (72.22%)1001212123
GO:0009889regulation of biosynthetic process13 (72.22%)1001212123
GO:0031326regulation of cellular biosynthetic process13 (72.22%)1001212123
GO:2000112regulation of cellular macromolecule biosynthetic process13 (72.22%)1001212123
GO:0031323regulation of cellular metabolic process13 (72.22%)1001212123
GO:0050794regulation of cellular process13 (72.22%)1001212123
GO:0010468regulation of gene expression13 (72.22%)1001212123
GO:0010556regulation of macromolecule biosynthetic process13 (72.22%)1001212123
GO:0060255regulation of macromolecule metabolic process13 (72.22%)1001212123
GO:0019222regulation of metabolic process13 (72.22%)1001212123
GO:0051171regulation of nitrogen compound metabolic process13 (72.22%)1001212123
GO:0019219regulation of nucleobase-containing compound metabolic process13 (72.22%)1001212123
GO:0080090regulation of primary metabolic process13 (72.22%)1001212123
GO:0006355regulation of transcription, DNA-dependent13 (72.22%)1001212123
GO:0006351transcription, DNA-templated13 (72.22%)1001212123
GO:0044699single-organism process6 (33.33%)1000310001
GO:0050896response to stimulus5 (27.78%)1000310000
GO:0009628response to abiotic stimulus4 (22.22%)1000210000
GO:0006950response to stress4 (22.22%)0000310000
GO:0044763single-organism cellular process4 (22.22%)1000200001
GO:0048856anatomical structure development3 (16.67%)1000110000
GO:0032502developmental process3 (16.67%)1000110000
GO:0007275multicellular organismal development3 (16.67%)1000110000
GO:0032501multicellular organismal process3 (16.67%)1000110000
GO:0042221response to chemical3 (16.67%)1000200000
GO:0009719response to endogenous stimulus3 (16.67%)1000200000
GO:0009725response to hormone3 (16.67%)1000200000
GO:0010033response to organic substance3 (16.67%)1000200000
GO:0044707single-multicellular organism process3 (16.67%)1000110000
GO:0044767single-organism developmental process3 (16.67%)1000110000
GO:0044710single-organism metabolic process3 (16.67%)1000100001
GO:0048731system development3 (16.67%)1000110000
GO:0048507meristem development2 (11.11%)0000110000
GO:0048519negative regulation of biological process2 (11.11%)1000100000
GO:0048523negative regulation of cellular process2 (11.11%)1000100000
GO:0048513organ development2 (11.11%)0000110000
GO:0055114oxidation-reduction process2 (11.11%)0000100001
GO:0040034regulation of development, heterochronic2 (11.11%)0000110000
GO:0050793regulation of developmental process2 (11.11%)0000110000
GO:0048509regulation of meristem development2 (11.11%)0000110000
GO:2000026regulation of multicellular organismal development2 (11.11%)0000110000
GO:0051239regulation of multicellular organismal process2 (11.11%)0000110000
GO:0048506regulation of timing of meristematic phase transition2 (11.11%)0000110000
GO:0048510regulation of timing of transition from vegetative to reproductive phase2 (11.11%)0000110000
GO:0009737response to abscisic acid2 (11.11%)0000200000
GO:0097305response to alcohol2 (11.11%)0000200000
GO:0009409response to cold2 (11.11%)0000110000
GO:0033993response to lipid2 (11.11%)0000200000
GO:1901700response to oxygen-containing compound2 (11.11%)0000200000
GO:0009266response to temperature stimulus2 (11.11%)0000110000
GO:0009888tissue development2 (11.11%)0000110000
GO:0010048vernalization response2 (11.11%)0000110000
GO:0009688abscisic acid biosynthetic process1 (5.56%)1000000000
GO:0009687abscisic acid metabolic process1 (5.56%)1000000000
GO:0009738abscisic acid-activated signaling pathway1 (5.56%)0000100000
GO:0046165alcohol biosynthetic process1 (5.56%)1000000000
GO:0006066alcohol metabolic process1 (5.56%)1000000000
GO:0043289apocarotenoid biosynthetic process1 (5.56%)1000000000
GO:0043288apocarotenoid metabolic process1 (5.56%)1000000000
GO:0046394carboxylic acid biosynthetic process1 (5.56%)1000000000
GO:0019752carboxylic acid metabolic process1 (5.56%)1000000000
GO:0007154cell communication1 (5.56%)0000100000
GO:0008283cell proliferation1 (5.56%)1000000000
GO:0006081cellular aldehyde metabolic process1 (5.56%)0000100000
GO:0042180cellular ketone metabolic process1 (5.56%)1000000000
GO:0044255cellular lipid metabolic process1 (5.56%)1000000000
GO:0045333cellular respiration1 (5.56%)0000000001
GO:0071215cellular response to abscisic acid stimulus1 (5.56%)0000100000
GO:0097306cellular response to alcohol1 (5.56%)0000100000
GO:0070887cellular response to chemical stimulus1 (5.56%)0000100000
GO:0071495cellular response to endogenous stimulus1 (5.56%)0000100000
GO:0032870cellular response to hormone stimulus1 (5.56%)0000100000
GO:0071396cellular response to lipid1 (5.56%)0000100000
GO:0071310cellular response to organic substance1 (5.56%)0000100000
GO:1901701cellular response to oxygen-containing compound1 (5.56%)0000100000
GO:0051716cellular response to stimulus1 (5.56%)0000100000
GO:0003006developmental process involved in reproduction1 (5.56%)1000000000
GO:0016102diterpenoid biosynthetic process1 (5.56%)1000000000
GO:0016101diterpenoid metabolic process1 (5.56%)1000000000
GO:0022900electron transport chain1 (5.56%)0000000001
GO:0009790embryo development1 (5.56%)1000000000
GO:0009793embryo development ending in seed dormancy1 (5.56%)1000000000
GO:0015980energy derivation by oxidation of organic compounds1 (5.56%)0000000001
GO:0010154fruit development1 (5.56%)1000000000
GO:0006091generation of precursor metabolites and energy1 (5.56%)0000000001
GO:0009686gibberellin biosynthetic process1 (5.56%)1000000000
GO:0009685gibberellin metabolic process1 (5.56%)1000000000
GO:0009755hormone-mediated signaling pathway1 (5.56%)0000100000
GO:0008299isoprenoid biosynthetic process1 (5.56%)1000000000
GO:0006720isoprenoid metabolic process1 (5.56%)1000000000
GO:0008610lipid biosynthetic process1 (5.56%)1000000000
GO:0006629lipid metabolic process1 (5.56%)1000000000
GO:0072330monocarboxylic acid biosynthetic process1 (5.56%)1000000000
GO:0032787monocarboxylic acid metabolic process1 (5.56%)1000000000
GO:0009788negative regulation of abscisic acid-activated signaling pathway1 (5.56%)0000100000
GO:0009890negative regulation of biosynthetic process1 (5.56%)1000000000
GO:0010648negative regulation of cell communication1 (5.56%)0000100000
GO:0031327negative regulation of cellular biosynthetic process1 (5.56%)1000000000
GO:0031324negative regulation of cellular metabolic process1 (5.56%)1000000000
GO:0010373negative regulation of gibberellin biosynthetic process1 (5.56%)1000000000
GO:0045827negative regulation of isoprenoid metabolic process1 (5.56%)1000000000
GO:0051055negative regulation of lipid biosynthetic process1 (5.56%)1000000000
GO:0045833negative regulation of lipid metabolic process1 (5.56%)1000000000
GO:0009892negative regulation of metabolic process1 (5.56%)1000000000
GO:1901420negative regulation of response to alcohol1 (5.56%)0000100000
GO:0048585negative regulation of response to stimulus1 (5.56%)0000100000
GO:0009968negative regulation of signal transduction1 (5.56%)0000100000
GO:0023057negative regulation of signaling1 (5.56%)0000100000
GO:0016053organic acid biosynthetic process1 (5.56%)1000000000
GO:0006082organic acid metabolic process1 (5.56%)1000000000
GO:1901617organic hydroxy compound biosynthetic process1 (5.56%)1000000000
GO:1901615organic hydroxy compound metabolic process1 (5.56%)1000000000
GO:0043436oxoacid metabolic process1 (5.56%)1000000000
GO:0009648photoperiodism1 (5.56%)1000000000
GO:0048573photoperiodism, flowering1 (5.56%)1000000000
GO:0010116positive regulation of abscisic acid biosynthetic process1 (5.56%)1000000000
GO:0048518positive regulation of biological process1 (5.56%)1000000000
GO:0009891positive regulation of biosynthetic process1 (5.56%)1000000000
GO:0008284positive regulation of cell proliferation1 (5.56%)1000000000
GO:0031328positive regulation of cellular biosynthetic process1 (5.56%)1000000000
GO:0031325positive regulation of cellular metabolic process1 (5.56%)1000000000
GO:0048522positive regulation of cellular process1 (5.56%)1000000000
GO:0045828positive regulation of isoprenoid metabolic process1 (5.56%)1000000000
GO:0046889positive regulation of lipid biosynthetic process1 (5.56%)1000000000
GO:0045834positive regulation of lipid metabolic process1 (5.56%)1000000000
GO:0009893positive regulation of metabolic process1 (5.56%)1000000000
GO:0009791post-embryonic development1 (5.56%)1000000000
GO:0010115regulation of abscisic acid biosynthetic process1 (5.56%)1000000000
GO:0009787regulation of abscisic acid-activated signaling pathway1 (5.56%)0000100000
GO:0010646regulation of cell communication1 (5.56%)0000100000
GO:0042127regulation of cell proliferation1 (5.56%)1000000000
GO:0010565regulation of cellular ketone metabolic process1 (5.56%)1000000000
GO:0010371regulation of gibberellin biosynthetic process1 (5.56%)1000000000
GO:0019747regulation of isoprenoid metabolic process1 (5.56%)1000000000
GO:0046890regulation of lipid biosynthetic process1 (5.56%)1000000000
GO:0019216regulation of lipid metabolic process1 (5.56%)1000000000
GO:1901419regulation of response to alcohol1 (5.56%)0000100000
GO:0048583regulation of response to stimulus1 (5.56%)0000100000
GO:0043455regulation of secondary metabolic process1 (5.56%)1000000000
GO:0009966regulation of signal transduction1 (5.56%)0000100000
GO:0023051regulation of signaling1 (5.56%)0000100000
GO:0000003reproduction1 (5.56%)1000000000
GO:0022414reproductive process1 (5.56%)1000000000
GO:0048608reproductive structure development1 (5.56%)1000000000
GO:0061458reproductive system development1 (5.56%)1000000000
GO:0022904respiratory electron transport chain1 (5.56%)0000000001
GO:0009733response to auxin1 (5.56%)1000000000
GO:0009269response to desiccation1 (5.56%)0000100000
GO:0010035response to inorganic substance1 (5.56%)0000100000
GO:0009416response to light stimulus1 (5.56%)1000000000
GO:0006970response to osmotic stress1 (5.56%)0000100000
GO:0009314response to radiation1 (5.56%)1000000000
GO:0009651response to salt stress1 (5.56%)0000100000
GO:0009415response to water1 (5.56%)0000100000
GO:0009414response to water deprivation1 (5.56%)0000100000
GO:0009611response to wounding1 (5.56%)0000100000
GO:0019748secondary metabolic process1 (5.56%)1000000000
GO:0048316seed development1 (5.56%)1000000000
GO:0016106sesquiterpenoid biosynthetic process1 (5.56%)1000000000
GO:0006714sesquiterpenoid metabolic process1 (5.56%)1000000000
GO:0007165signal transduction1 (5.56%)0000100000
GO:0023052signaling1 (5.56%)0000100000
GO:0044702single organism reproductive process1 (5.56%)1000000000
GO:0044700single organism signaling1 (5.56%)0000100000
GO:0044711single-organism biosynthetic process1 (5.56%)1000000000
GO:0044283small molecule biosynthetic process1 (5.56%)1000000000
GO:0044281small molecule metabolic process1 (5.56%)1000000000
GO:0010262somatic embryogenesis1 (5.56%)1000000000
GO:0016114terpenoid biosynthetic process1 (5.56%)1000000000
GO:0006721terpenoid metabolic process1 (5.56%)1000000000
GO:0010228vegetative to reproductive phase transition of meristem1 (5.56%)1000000000