PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_230
Name: ARR11
Description: N/A

#Associated genes: 420
#Associated MapMan terms: 156

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	68 (16.19%)	6	4	4	27	12	4	4	7
27.3	RNA.regulation of transcription	61 (14.52%)	5	3	4	23	12	4	4	6
29	protein	53 (12.62%)	1	4	1	20	10	5	4	8
29.4	protein.postranslational modification	38 (9.05%)	1	3	1	15	7	4	2	5
28	DNA	25 (5.95%)	0	2	4	10	4	1	3	1
28.1	DNA.synthesis/chromatin structure	22 (5.24%)	0	1	4	10	2	1	3	1
31	cell	21 (5.00%)	0	2	0	7	6	1	3	2
26	misc	14 (3.33%)	2	3	0	5	2	2	0	0
30	signalling	14 (3.33%)	1	3	0	6	2	0	1	1
27.3.99	RNA.regulation of transcription.unclassified	13 (3.10%)	3	0	2	4	3	0	0	1
17	hormone metabolism	12 (2.86%)	1	2	0	6	0	1	1	1
34	transport	12 (2.86%)	2	1	0	5	2	0	0	2
28.1.3	DNA.synthesis/chromatin structure.histone	11 (2.62%)	0	1	2	7	0	0	1	0
29.5	protein.degradation	10 (2.38%)	0	1	0	1	3	1	1	3
31.1	cell.organisation	10 (2.38%)	0	1	0	3	2	1	2	1
26.7	misc.oxidases - copper, flavone etc	8 (1.90%)	1	2	0	3	1	1	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	8 (1.90%)	0	0	0	4	3	0	1	0
27.1	RNA.processing	7 (1.67%)	1	1	0	4	0	0	0	1
17.2	hormone metabolism.auxin	6 (1.43%)	0	1	0	3	0	1	0	1
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	6 (1.43%)	0	3	0	3	0	0	0	0
30.3	signalling.calcium	6 (1.43%)	0	1	0	5	0	0	0	0
31.4	cell.vesicle transport	6 (1.43%)	0	0	0	1	3	0	1	1
20	stress	5 (1.19%)	1	0	0	0	3	0	0	1
23	nucleotide metabolism	5 (1.19%)	0	3	0	1	1	0	0	0
29.3	protein.targeting	5 (1.19%)	0	0	0	4	0	0	1	0
29.5.11	protein.degradation.ubiquitin	5 (1.19%)	0	0	0	0	1	0	1	3
33	development	5 (1.19%)	0	0	1	2	0	0	1	1
33.99	development.unspecified	5 (1.19%)	0	0	1	2	0	0	1	1
34.8	transport.metabolite transporters at the envelope membrane	5 (1.19%)	1	0	0	3	0	0	0	1
34.99	transport.misc	5 (1.19%)	0	0	0	2	2	0	0	1
11	lipid metabolism	4 (0.95%)	1	1	0	0	1	0	0	1
23.2	nucleotide metabolism.degradation	4 (0.95%)	0	3	0	1	0	0	0	0
27.1.2	RNA.processing.RNA helicase	4 (0.95%)	0	0	0	4	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	4 (0.95%)	0	0	1	1	2	0	0	0
30.5	signalling.G-proteins	4 (0.95%)	1	1	0	0	2	0	0	0
10	cell wall	3 (0.71%)	1	0	0	0	1	0	0	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	3 (0.71%)	0	1	0	0	1	0	0	1
17.2.2	hormone metabolism.auxin.signal transduction	3 (0.71%)	0	0	0	1	0	1	0	1
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	3 (0.71%)	0	1	0	2	0	0	0	0
17.5	hormone metabolism.ethylene	3 (0.71%)	0	0	0	2	0	0	1	0
20.2	stress.abiotic	3 (0.71%)	0	0	0	0	2	0	0	1
27.3.63	RNA.regulation of transcription.PHD finger transcription factor	3 (0.71%)	0	0	0	1	0	0	0	2
27.3.73	RNA.regulation of transcription.Zn-finger(CCHC)	3 (0.71%)	0	0	0	2	0	0	1	0
28.1.1	DNA.synthesis/chromatin structure.retrotransposon/transposase	3 (0.71%)	0	0	0	0	2	0	1	0
28.1.1.4	DNA.synthesis/chromatin structure.retrotransposon/transposase.hat-like transposase	3 (0.71%)	0	0	0	0	2	0	1	0
29.3.4	protein.targeting.secretory pathway	3 (0.71%)	0	0	0	2	0	0	1	0
29.5.11.3	protein.degradation.ubiquitin.E2	3 (0.71%)	0	0	0	0	1	0	0	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	3 (0.71%)	0	1	0	1	1	0	0	0
30.2	signalling.receptor kinases	3 (0.71%)	0	1	0	1	0	0	1	0
31.2	cell.division	3 (0.71%)	0	0	0	3	0	0	0	0
1	PS	2 (0.48%)	0	0	0	0	1	0	0	1
2	major CHO metabolism	2 (0.48%)	1	0	0	0	0	0	0	1
9	mitochondrial electron transport / ATP synthesis	2 (0.48%)	0	0	0	1	0	0	0	1
11.8.3	lipid metabolism.exotics (steroids, squalene etc).UDP-glucose:sterol glucosyltransferase	2 (0.48%)	0	1	0	0	0	0	0	1
13.1	amino acid metabolism.synthesis	2 (0.48%)	0	0	0	0	2	0	0	0
17.1	hormone metabolism.abscisic acid	2 (0.48%)	1	1	0	0	0	0	0	0
17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	2 (0.48%)	0	0	0	0	1	0	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	2 (0.48%)	0	0	0	2	0	0	0	0
17.5.1.1	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	2 (0.48%)	0	0	0	2	0	0	0	0
2.2	major CHO metabolism.degradation	2 (0.48%)	1	0	0	0	0	0	0	1
20.1	stress.biotic	2 (0.48%)	1	0	0	0	1	0	0	0
20.2.1	stress.abiotic.heat	2 (0.48%)	0	0	0	0	1	0	0	1
26.10	misc.cytochrome P450	2 (0.48%)	0	0	0	0	1	1	0	0
26.3	misc.gluco-, galacto- and mannosidases	2 (0.48%)	0	0	0	2	0	0	0	0
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	2 (0.48%)	0	0	0	2	0	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	2 (0.48%)	0	0	1	0	1	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (0.48%)	0	0	0	2	0	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (0.48%)	0	0	0	1	1	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	2 (0.48%)	0	0	0	2	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (0.48%)	0	0	0	2	0	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	2 (0.48%)	0	0	0	0	0	0	1	1
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	2 (0.48%)	0	0	0	0	0	1	0	1
28.99	DNA.unspecified	2 (0.48%)	0	0	0	0	2	0	0	0
29.2.1.1.1.1.12	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S12	2 (0.48%)	0	0	0	0	2	0	0	0
29.3.1	protein.targeting.nucleus	2 (0.48%)	0	0	0	2	0	0	0	0
29.3.4.4	protein.targeting.secretory pathway.plasma membrane	2 (0.48%)	0	0	0	1	0	0	1	0
29.5.5	protein.degradation.serine protease	2 (0.48%)	0	0	0	0	1	1	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	2 (0.48%)	0	0	0	1	0	0	0	1
31.3	cell.cycle	2 (0.48%)	0	1	0	0	1	0	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	2 (0.48%)	0	0	0	1	0	0	0	1
13	amino acid metabolism	2 (0.48%)	0	0	0	0	2	0	0	0
1.1	PS.lightreaction	1 (0.24%)	0	0	0	0	0	0	0	1
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.24%)	0	0	0	0	0	0	0	1
1.3	PS.calvin cycle	1 (0.24%)	0	0	0	0	1	0	0	0
1.3.6	PS.calvin cycle.aldolase	1 (0.24%)	0	0	0	0	1	0	0	0
3	minor CHO metabolism	1 (0.24%)	0	0	0	0	1	0	0	0
8	TCA / org transformation	1 (0.24%)	0	0	0	1	0	0	0	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	1 (0.24%)	0	0	0	0	1	0	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.24%)	1	0	0	0	0	0	0	0
10.5.1.2	cell wall.cell wall proteins.AGPs.AGP Fucosyltransferase	1 (0.24%)	1	0	0	0	0	0	0	0
10.8.1	cell wall.pectin*esterases.PME	1 (0.24%)	0	0	0	0	0	0	0	1
11.10.1	lipid metabolism.glycolipid synthesis.MGDG synthase	1 (0.24%)	1	0	0	0	0	0	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.24%)	0	0	0	0	1	0	0	0
13.1.3	amino acid metabolism.synthesis.aspartate family	1 (0.24%)	0	0	0	0	1	0	0	0
13.1.3.5	amino acid metabolism.synthesis.aspartate family.lysine	1 (0.24%)	0	0	0	0	1	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.24%)	0	0	0	0	1	0	0	0
13.1.6.1	amino acid metabolism.synthesis.aromatic aa.chorismate	1 (0.24%)	0	0	0	0	1	0	0	0
13.1.6.1.2	amino acid metabolism.synthesis.aromatic aa.chorismate.3-dehydroquinate synthase	1 (0.24%)	0	0	0	0	1	0	0	0
16.4.1	secondary metabolism.N misc.alkaloid-like	1 (0.24%)	1	0	0	0	0	0	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.24%)	0	1	0	0	0	0	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.24%)	1	0	0	0	0	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	1 (0.24%)	0	0	0	1	0	0	0	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	1 (0.24%)	0	0	0	1	0	0	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.24%)	0	0	0	0	0	0	1	0
18.3.1	Co-factor and vitamine metabolism.riboflavin.GTP cyclohydrolase II	1 (0.24%)	0	1	0	0	0	0	0	0
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.24%)	0	0	0	0	0	0	0	1
2.2.1.4	major CHO metabolism.degradation.sucrose.hexokinase	1 (0.24%)	0	0	0	0	0	0	0	1
2.2.2	major CHO metabolism.degradation.starch	1 (0.24%)	1	0	0	0	0	0	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	1 (0.24%)	1	0	0	0	0	0	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	1 (0.24%)	1	0	0	0	0	0	0	0
20.2.3	stress.abiotic.drought/salt	1 (0.24%)	0	0	0	0	1	0	0	0
3.1	minor CHO metabolism.raffinose family	1 (0.24%)	0	0	0	0	1	0	0	0
8.1	TCA / org transformation.TCA	1 (0.24%)	0	0	0	1	0	0	0	0
10.2	cell wall.cellulose synthesis	1 (0.24%)	0	0	0	0	1	0	0	0
10.5	cell wall.cell wall proteins	1 (0.24%)	1	0	0	0	0	0	0	0
10.8	cell wall.pectin*esterases	1 (0.24%)	0	0	0	0	0	0	0	1
11.10	lipid metabolism.glycolipid synthesis	1 (0.24%)	1	0	0	0	0	0	0	0
16	secondary metabolism	1 (0.24%)	1	0	0	0	0	0	0	0
16.4	secondary metabolism.N misc	1 (0.24%)	1	0	0	0	0	0	0	0
17.3	hormone metabolism.brassinosteroid	1 (0.24%)	0	0	0	1	0	0	0	0
18	Co-factor and vitamine metabolism	1 (0.24%)	0	1	0	0	0	0	0	0
18.3	Co-factor and vitamine metabolism.riboflavin	1 (0.24%)	0	1	0	0	0	0	0	0
21	redox	1 (0.24%)	0	0	0	1	0	0	0	0
21.1	redox.thioredoxin	1 (0.24%)	0	0	0	1	0	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.24%)	0	0	0	0	1	0	0	0
23.3.3	nucleotide metabolism.salvage.NUDIX hydrolases	1 (0.24%)	0	0	0	0	1	0	0	0
26.13	misc.acid and other phosphatases	1 (0.24%)	1	0	0	0	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (0.24%)	0	1	0	0	0	0	0	0
27.1.3	RNA.processing.3 end processing	1 (0.24%)	1	0	0	0	0	0	0	0
27.1.3.11	RNA.processing.3 end processing.Pfs2	1 (0.24%)	1	0	0	0	0	0	0	0
27.3.18	RNA.regulation of transcription.E2F/DP transcription factor family	1 (0.24%)	0	0	0	0	0	1	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.24%)	0	0	0	0	0	1	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.24%)	0	0	0	1	0	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.24%)	1	0	0	0	0	0	0	0
27.3.5	RNA.regulation of transcription.ARR	1 (0.24%)	1	0	0	0	0	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.24%)	0	0	0	1	0	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.24%)	0	0	0	1	0	0	0	0
28.2	DNA.repair	1 (0.24%)	0	1	0	0	0	0	0	0
29.2.1.1.1.1.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S2	1 (0.24%)	0	0	0	0	0	0	1	0
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	1 (0.24%)	0	0	0	0	0	0	1	0
29.2.1.2.1.20	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20	1 (0.24%)	0	1	0	0	0	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.24%)	0	0	0	1	0	0	0	0
29.5.11.4.1	protein.degradation.ubiquitin.E3.HECT	1 (0.24%)	0	0	0	0	0	1	0	0
29.5.11.4.5	protein.degradation.ubiquitin.E3.BTB/POZ Cullin3	1 (0.24%)	1	0	0	0	0	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.24%)	0	0	0	0	0	0	1	0
3.1.2	minor CHO metabolism.raffinose family.raffinose synthases	1 (0.24%)	0	0	0	0	1	0	0	0
3.1.2.2	minor CHO metabolism.raffinose family.raffinose synthases.putative	1 (0.24%)	0	0	0	0	1	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.24%)	0	0	0	1	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.24%)	0	1	0	0	0	0	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.24%)	0	0	0	0	0	0	1	0
30.4	signalling.phosphinositides	1 (0.24%)	0	0	0	0	0	0	0	1
30.4.4	signalling.phosphinositides.phosphoinositide phospholipase C	1 (0.24%)	0	0	0	0	0	0	0	1
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.24%)	0	1	0	0	0	0	0	0
34.21	transport.calcium	1 (0.24%)	0	1	0	0	0	0	0	0
34.7	transport.phosphate	1 (0.24%)	1	0	0	0	0	0	0	0
8.1.3	TCA / org transformation.TCA.aconitase	1 (0.24%)	0	0	0	1	0	0	0	0