PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_83
Name: CIACADIANLELHC
Description: Region necessary for circadian expression of tomato Lhc gene

Sequence: CAANNNNATC
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	65.51%
Motif_692	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	61.63%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	61.63%
Matrix_521	AHL20	Not Available	59.80%
Matrix_54	AHL20	Not Available	58.80%
Matrix_125	AHL12	Not Available	58.22%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	58.09%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	58.09%
Matrix_185	AHL25	Not Available	58.01%
Motif_184	PROXBBNNAPA	prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	57.75%
Motif_649	2SSEEDPROTBANAPA	Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter	57.75%
Matrix_441	ATHB5	Not Available	57.43%
Matrix_341	HMGA	Not Available	56.92%
Matrix_212	ATHB-12	Not Available	56.46%
Matrix_88	AHL12	Not Available	56.43%
Matrix_259	AT1G50680; AT1G51120	Not Available	56.25%
Matrix_32	AHL25	Not Available	56.08%
Matrix_166	TGA4	Not Available	55.92%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	55.86%
Matrix_81	YAB1	Not Available	55.61%
Motif_71	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	55.51%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	55.51%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	55.51%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	55.51%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	55.51%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	55.51%
Motif_616	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	55.51%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	55.51%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	55.51%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	55.51%
Motif_312	OCTAMERMOTIFTAH3H4	Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes	55.51%
Motif_362	TGA2 octamer	palindromic octamer found enriched in chip-chip regions for TGA2	55.51%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	55.51%
Motif_36	OCETYPEIINTHISTONE	Type II element; Oct-containing composite element Type II found in tobacco histone gene promoter; Oct (octomer) motif is paired with TCA motif to form Type II element; Required for S-phase specific and meristematic tissue-specific expression	55.51%
Matrix_168	AHL25	Not Available	55.42%
Matrix_46	AT4G21895	Not Available	55.38%
Matrix_142	ZFP8	Not Available	55.29%
Matrix_308	INO	Not Available	54.82%
Matrix_442	AT5G62260	Not Available	54.49%
Matrix_311	TGA1	Not Available	54.12%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	54.12%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	53.96%
Motif_104	CAREOSREP1	CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice	53.88%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	53.81%
Matrix_391	AHL20	Not Available	53.80%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	53.54%
Matrix_141	AT3G25990	Not Available	52.91%
Matrix_59	AT4G00238; AT4G00250	Not Available	52.78%
Matrix_17	WRKY22	Not Available	52.69%
Matrix_53	MYC3	Not Available	52.60%
Matrix_128	TGA2	Not Available	52.44%
Matrix_366	ARR14	Not Available	52.44%
Matrix_479	TOE1	Not Available	52.40%
Matrix_143	GATA14; GATA6; GATA5	Not Available	51.93%
Matrix_313	ATMYB65; MYB33	Not Available	51.93%
Matrix_430	TOE2	Not Available	51.81%
Matrix_416	ASL5	Not Available	51.75%
Matrix_265	NGA3	Not Available	51.74%
Matrix_193	RAV1	Not Available	51.74%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	51.63%
Motif_70	CANBNNAPA	Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor	51.63%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	51.63%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	51.63%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	51.63%
Motif_511	RYREPEATGMGY2	RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)	51.63%
Motif_263	RYREPEATVFLEB4; ABI3	RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	51.63%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	51.63%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	51.63%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	51.63%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	51.63%
Matrix_70	GATA26	Not Available	51.38%
Matrix_151	ASIL1	Not Available	51.32%
Matrix_427	ZAT14	Not Available	51.30%
Matrix_434	ARR11	Not Available	51.24%
Matrix_262	ATGRP2B; CSDP2	Not Available	51.09%
Matrix_93	YAB5	Not Available	50.97%
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	50.56%
Matrix_432	AT1G77920	Not Available	50.54%
Matrix_12	EIN3; EIL2	Not Available	50.52%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	50.45%
Matrix_380	ATMYR1	Not Available	50.37%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.34%
Matrix_114	EPR1; AT3G10113	Not Available	50.33%
Matrix_382	AT3G04850	Not Available	50.30%
Matrix_248	ZFP5	Not Available	50.04%
Matrix_286	GATA7	Not Available	50.02%
Motif_194	EBOXBNNAPA	E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1	50.00%
Motif_193	GLK1	GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis	50.00%