PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_568
Name: MYB98
Description: MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins

Sequence: CCTAACGGA
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	88.89%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	77.78%
Motif_470	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	77.78%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	77.78%
Motif_172	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	77.78%
Motif_690	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	77.78%
Motif_212	GARE2OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	66.67%
Motif_546	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	66.67%
Motif_683	AtMYB2 BS in RD22	Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression	66.67%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	66.67%
Motif_351	GARE1OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	66.67%
Motif_564	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	66.67%
Matrix_254	MYB52	Not Available	63.66%
Motif_520	AMYBOX1	amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley	61.11%
Matrix_291	EDF3	Not Available	59.04%
Matrix_180	SPL1	Not Available	58.92%
Matrix_31	SPL1	Not Available	57.70%
Matrix_137	SPL1; SPL12	Not Available	57.35%
Matrix_494	OBP4	Not Available	56.96%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_88	MYB2AT	Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis	55.56%
Motif_86	ACGTABOX	A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression	55.56%
Motif_614	MYBGAHV	Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression	55.56%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	55.56%
Motif_141	BP5OSWX	OsBP-5 (a MYC protein) binding site in Wx promoter	55.56%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	55.56%
Motif_554	AtLHY; AtCCA1	LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms	55.56%
Motif_517	LEAFYATAG	Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis	55.56%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	55.56%
Motif_623	MYBCOREATCYCB1	Myb core in the 18 bp sequence which is able to activate reporter gene without leading to M-phase-specific expression, found in the promoter of Arabidopsis thaliana cyclin B1:1 gene; the 18 bp sequence share homology with a sequence found in the N. sylvestris cyclin B1 promoter	55.56%
Motif_559	RAV1-A binding site motif; RAV1AAT	Binding consensus sequence of Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	55.56%
Motif_496	JASE1ATOPR1	JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	55.56%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	55.56%
Motif_27	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	55.56%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	55.56%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	55.56%
Motif_9	RBENTGA3	rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs	55.56%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	55.56%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	55.56%
Motif_223	LTRE1HVBLT49	LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC	55.56%
Motif_182	MYB2CONSENSUSAT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22	55.56%
Matrix_209	RAP2.6	Not Available	55.00%
Matrix_150	UNE10; PIF7	Not Available	54.75%
Matrix_319	TEM1	Not Available	54.06%
Matrix_159	TEM2	Not Available	53.57%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	52.59%
Matrix_60	AT1G01260; AT5G57150	Not Available	52.01%
Matrix_411	DOF5.6	Not Available	51.75%
Matrix_476	bHLH115; bHLH34	Not Available	51.57%
Motif_139	RHERPATEXPA7	Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns	51.49%
Motif_531	AP2SV40	AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	51.49%
Matrix_388	SNZ; SMZ; TOE2	Not Available	51.25%
Matrix_85	SPL5	Not Available	51.21%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	51.06%
Matrix_487	AT1G29160	Not Available	50.55%
Motif_317	GAREAT	GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively	50.00%
Motif_292	MYBPZM	Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes	50.00%
Motif_618	MYB1AT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis	50.00%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	50.00%