PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_50
Name: AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5
Description: Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses

Sequence: GAGCCGCCA
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	88.89%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	88.89%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	88.89%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	88.89%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	88.89%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	88.89%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	77.78%
Matrix_295	ERF1	Not Available	76.54%
Matrix_360	ORA59	Not Available	72.98%
Matrix_484	ATERF13	Not Available	72.29%
Matrix_86	CRF5; CRF6; CRF4	Not Available	70.50%
Matrix_426	CRF1; CRF2	Not Available	69.72%
Matrix_147	ERF3; AT1G80580	Not Available	69.35%
Matrix_224	ERF1	Not Available	68.88%
Matrix_363	RAP2.3	Not Available	68.77%
Matrix_517	ERF12	Not Available	68.12%
Matrix_378	ATERF1	Not Available	67.94%
Matrix_138	RRTF1	Not Available	67.76%
Matrix_45	DRN	Not Available	67.54%
Matrix_288	RAP2.3	Not Available	67.05%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	66.67%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	66.67%
Motif_313	ERF1 BS in AtCHI-B	Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature	66.67%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	66.67%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	66.67%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	66.67%
Matrix_119	RRTF1	Not Available	65.82%
Matrix_473	RRTF1	Not Available	65.79%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	65.40%
Matrix_506	DRNL; ATERF-4	Not Available	65.20%
Matrix_252	RAP2.6	Not Available	64.75%
Matrix_261	ATERF-1	Not Available	63.53%
Matrix_277	RAP2.6	Not Available	63.05%
Matrix_478	AT1G01250	Not Available	63.03%
Matrix_493	AT1G22985; AT1G71130	Not Available	62.90%
Matrix_91	CRF3	Not Available	62.88%
Matrix_321	HRD	Not Available	62.71%
Matrix_5	AT5G51190; ERF104	Not Available	62.63%
Matrix_146	ORA47	Not Available	62.56%
Matrix_234	RAP2.3	Not Available	62.14%
Matrix_50	ATERF14; AT5G43410	Not Available	61.75%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	61.44%
Matrix_272	DEAR4	Not Available	60.95%
Matrix_343	AT2G33710	Not Available	60.74%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	58.50%
Matrix_334	AT3G23230	Not Available	58.45%
Matrix_448	ATERF6	Not Available	57.88%
Matrix_374	AT5G07580; AT5G61590	Not Available	56.52%
Matrix_433	ATERF1	Not Available	56.45%
Matrix_344	ATERF15; AT4G18450	Not Available	56.22%
Motif_98	SEF3MOTIFGM	SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4	55.56%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	55.56%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	55.56%
Motif_622	SORLIP2AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	55.56%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	55.56%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	55.56%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	55.56%
Motif_358	UP2ATMSD	Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	55.56%
Motif_643	DRE2COREZMRAB17	DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA	55.56%
Motif_453	HEXMOTIFTAH3H4	hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site	55.56%
Motif_437	ANAERO2CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)	55.56%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.56%
Motif_459	SORLIP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	55.56%
Motif_632	EREGCC	GCC box in ERE (ethylene responsive element); Ethylene-responsive region of tobacco (N.t.) chitinase gene contains two copies of the GCC-box; ERF2 and ERF4 enhanced the GCC box-mediated transcription; ERF3 reduced the transcription of the reporter gene in tobacco protoplasts; Binding site of AtEBP; Pti4/5/6 proteins from tomato which belong to the ERF family activate the expression of GCC box-containing PR genes; ERF3 was found to interact with NtUBC2, a ubiquitin-conjugating enzyme; Identification of an ethylene-responsive region in the promoter of a tobacco class I chitinase gene	55.56%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	55.56%
Motif_233	DRE1COREZMRAB17	DRE1 core found in maize rab17 gene promoter; DRE1 was protected, in in vivo footprinting, by a protein in embryos specifically, but in leaves, was protected when was treated with ABA and drought; rab17 is expressed during late embryogenesis, and is induced by ABA	55.56%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	55.56%
Motif_239	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	55.56%
Motif_209	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	55.56%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.56%
Motif_33	ACGTCBOX	C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site	55.56%
Matrix_190	ATERF1	Not Available	54.97%
Matrix_409	DEAR3	Not Available	54.43%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	53.45%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	53.35%
Matrix_61	ATCBF3	Not Available	52.81%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	52.44%
Matrix_355	ERF10; ERF11	Not Available	52.31%
Matrix_362	DEAR3	Not Available	52.27%
Matrix_244	DREB2C	Not Available	52.06%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	51.73%
Matrix_232	TCP23	Not Available	51.60%
Matrix_287	ERF2	Not Available	51.60%
Matrix_285	DDF1	Not Available	51.40%
Matrix_346	AtMYB70; MYB73	Not Available	51.34%
Matrix_394	DREB_U	Not Available	50.49%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	50.25%
Matrix_405	DREB2C	Not Available	50.07%
Motif_454	DRECRTCOREAT	Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)	50.00%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	50.00%
Motif_106	PR2GCNT	GC element conserved in the 5' upstream regions of group 2 PR protein genes (beta-1,3-glucanase (GLN2), chitinase (CHN17, CHN50)) of tobacco	50.00%