Motif_45 | AGL25; SOC1 | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 68.75% |
Motif_449 | AGL25; SVP | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 68.75% |
Matrix_132 | SOC1 | Not Available | | 64.28% |
Motif_44 | AGL25 | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis | | 62.50% |
Matrix_464 | AGL15; AGL71 | Not Available | | 58.29% |
Motif_679 | SB1NPABC1 | Sclareol box1 (SB1) found at -827 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression | | 56.25% |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | | 56.25% |
Motif_96 | GARE4HVEPB1 | GARE-4 found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -142 to -156; Required for GA induction; Putative binding site of transcription factor, GAMyB | | 56.25% |
Motif_75 | TEFBOXATEEF1AA1 | tef-box found in the Arabidopsis eEF1AA1 gene promoter; An activating sequence associated with telo-box; Required for the gene expression in root primordia; Acts co-operatively with telo-box; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | | 56.25% |
Motif_151 | CCA1 motif2 BS in CAB1 | A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 56.25% |
Motif_240 | IBOXLSCMCUCUMISIN | I-box-like sequence found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; I-box-like sequence functions as a negative regulatory element | | 56.25% |
Motif_283 | TRANSTART | plant consensus sequence for translation start site | | 56.25% |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | | 56.25% |
Motif_315 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 56.25% |
Motif_551 | BOX1PVCHS15 | Box 1 of bean chs15 promoter; one of SBF-1 binding sites in chs15 promoter; Located at -318 to -305; Involved in organ-specific expression in plant development; Functions as a transcriptional silencer in electroporated protoplasts derived from undifferentiated suspension-cultured soybean cells; Resemble the binding site for the GT-1 factor in light-responsive elements | | 56.25% |
Matrix_18 | AP3 | Not Available | | 55.96% |
Motif_152 | MEJARELELOX | MeJa-responsive element (MeJaRE) in tomato lipoxygenase (LOX) gene; Related to tomato lipoxygenase gene expression during development and for MeJa (methyl jasmonate)-responsiveness | | 54.85% |
Matrix_149 | PI | Not Available | | 53.87% |
Motif_482 | GARE2 | Putative gibberellin responsive element; Consensus sequence of GA inducible alpha-amylase genes from rice, barley and wheat | | 53.26% |
Matrix_184 | AGL15 | Not Available | | 53.15% |
Motif_153 | MARABOX1 | A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR) | | 53.13% |
Motif_327 | AGAMOUSATCONSENSUS | Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338 | | 53.00% |
Matrix_414 | AGL15 | Not Available | | 51.03% |
Matrix_25 | AP3 | Not Available | | 50.99% |
Matrix_208 | AP1 | Not Available | | 50.63% |
Matrix_364 | FLC | Not Available | | 50.37% |
Matrix_309 | FLC | Not Available | | 50.28% |
Motif_111 | CArG1 motif in AP3 | CArG1 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site of AP3/PI heterodimer; Binding site for a positively acting factors; MADS domain transcription factors bind with a consensus sequence called the CArG box; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 50.00% |
Motif_646 | AACAOSGLUB1 | AACA motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes | | 50.00% |
Motif_475 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 50.00% |
Motif_257 | BOX1PSGS2 | Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1) | | 50.00% |
Motif_660 | GT-3b | Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor | | 50.00% |
Motif_114 | RSRBNEXTA | RSR (root specific region) in promoter region of Brassica napus extA extensin gene | | 50.00% |
Motif_267 | WBOXGACAD1A | W-box found in the promoter region of the CAD1-A (cotton (+) delta-cadinene synthase-A) gene (located in the region -340 to -327) of cotton;Binding site of GaWRKY1; GaWRKY1 regulates sesquiterpene biosynthesis in cotton | | 50.00% |
Motif_540 | CCA1 motif1 BS in CAB1 | A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 50.00% |
Motif_476 | XYLAT | cis-element identified among the promoters of the core xylem gene set | | 50.00% |
Motif_209 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 50.00% |
Motif_176 | AS1LIKECSHPRA | as-1-like motif found in cucumber hydroxypyruvate reductase (hprA) gene; Required for cytokinin responsiveness; Also see CYTOSITECSHPRA | | 50.00% |
Motif_600 | JASE2 motif in OPR1 | JASE2found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -112 and -100; Involved in up-regulation by both senescence and JA; JASE2 contains a mixed A/C box-like motif;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis | | 50.00% |
Motif_537 | CONSERVED11NTZMATP1 | Conserved 11 nt sequence found in the maize mitochondrial atp1 promoter; Located between -5 and +6; Essential for the expression | | 50.00% |
Motif_541 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 50.00% |
Motif_84 | C2GMAUX28 | C2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -552 and -553; Contains (ATT)4 sequence | | 50.00% |
Motif_19 | AAGACGTAGATACL12 | Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT) | | 50.00% |
Motif_76 | SURE1STPAT21 | Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato | | 50.00% |
Motif_664 | C1GMAUX28 | C1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -463 and -448; A/T-rich sequence | | 50.00% |
Motif_665 | ACEATCHS | ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system | | 50.00% |
Motif_39 | CYTOSITECSHPRA | 13 bp sequence of unknown function found in cucumber hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See AS1LIKECSHPRA found in the same region; Also involved in light responsiveness | | 50.00% |
Motif_355 | BOXINTPATPB | Box I found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | | 50.00% |
Motif_93 | RGATAOS | R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS | | 50.00% |
Motif_588 | TL1ATSAR | TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1 | | 50.00% |
Motif_333 | GLUTEBP1OS | Glutelin BP-1; Binding site in the promoter region of glutelin Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only in nuclear extract of developing seeds | | 50.00% |
Motif_326 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 50.00% |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | | 50.00% |