Motif_624 | ATHB6 binding site motif | Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis | | 66.67% |
Motif_147 | HDMOTIFPCPR2 | HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site | | 66.67% |
Motif_18 | 5659BOXLELAT5659 | 56/59 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen | | 62.50% |
Motif_38 | RSEPVGRP1 | RSE (root-specific element) of bean GRP1.8 gene; consensus sequence | | 58.33% |
Motif_187 | AT1BOX | AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element | | 58.33% |
Motif_408 | EVENINGAT | Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock | | 58.33% |
Motif_87 | AGL22; AGL20; AGL24 | Regulation of floral patterning by flowering time genes | | 58.33% |
Motif_581 | AP1 BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 58.33% |
Motif_677 | AGL22; AGL20; AGL24 | Regulation of floral patterning by flowering time genes | | 58.33% |
Motif_673 | Bellringer/replumless/pennywise BS2 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 58.33% |
Motif_656 | AG BS in SUP | Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS | | 58.33% |
Motif_637 | SARD1; CBP60g | Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors | | 58.33% |
Motif_547 | AG BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 58.33% |
Motif_608 | OBP-1-4-5 BS in GST6 | OBP1, 4, and 5 (OBF binding protein) binding site found in the Arabidopsis GST6 gene promoter; Located between -398 and -388; OBP1 is able to stimulate the binding of OBF proteins to the GST6 promoter;Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-term. region; Dof protein play important roles in plant growth and development;The promoter of a H202-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding RT | | 58.33% |
Matrix_29 | AP1 | Not Available | | 57.87% |
Motif_115 | HSEs binding site motif | Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? | | 56.46% |
Matrix_89 | SOC1 | Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 56.33% |
Matrix_124 | AtHB23; ATHB13; ATHB20; ATHB5 | Not Available | | 55.96% |
Matrix_383 | CCA1 | Not Available | | 55.80% |
Matrix_103 | ATHB1 | The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 54.91% |
Matrix_160 | RVE1 | Not Available | | 54.57% |
Motif_277 | ATHB1 binding site motif | Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 54.17% |
Motif_580 | L1BOXATPDF1 | L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein | | 54.17% |
Matrix_440 | LFY | Not Available | | 53.88% |
Matrix_391 | AHL20 | Not Available | | 53.49% |
Matrix_366 | ARR14 | Not Available | | 53.23% |
Motif_352 | ATHB5 binding site motif | Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro | | 53.23% |
Motif_464 | ARR1; ARR2 | Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators | | 53.23% |
Matrix_88 | AHL12 | Not Available | | 52.15% |
Matrix_318 | ATHB16 | Not Available | | 51.81% |
Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | | 51.12% |
Motif_169 | ATHB2 binding site motif | Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 51.12% |
Matrix_434 | ARR11 | Not Available | | 50.96% |
Matrix_441 | ATHB5 | Not Available | | 50.71% |
Matrix_483 | ICU4 | Not Available | | 50.49% |
Matrix_13 | HAT5 | Not Available | | 50.48% |
Matrix_67 | GLK1 | Not Available | | 50.31% |
Matrix_354 | AHL12 | Not Available | | 50.24% |
Matrix_435 | ATHB51 | Not Available | | 50.01% |
Motif_25 | GLUTAACAOS | glutelin common motif; AACA motif; Conserved in all member of rice glutelin | | 50.00% |
Motif_308 | SP8BFIBSP8AIB | One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 50.00% |
Motif_449 | AGL25; SVP | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 50.00% |
Motif_477 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 50.00% |
Motif_566 | AREB1; AREB2 | Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 50.00% |
Motif_540 | CCA1 motif1 BS in CAB1 | A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 50.00% |
Motif_517 | LEAFYATAG | Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis | | 50.00% |
Motif_500 | D1GMAUX28 | D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner | | 50.00% |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 50.00% |
Motif_23 | 14BPATERD1 | 14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis | | 50.00% |
Motif_172 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 50.00% |
Motif_138 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 50.00% |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | | 50.00% |
Motif_9 | RBENTGA3 | rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs | | 50.00% |
Motif_188 | CDA1ATCAB2 | CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis | | 50.00% |
Motif_579 | WRECSAA01 | Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts | | 50.00% |
Motif_248 | L1-box | Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element | | 50.00% |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | | 50.00% |
Motif_298 | GMHDLGMVSPB | Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein | | 50.00% |
Motif_572 | AGL15 BS in AtGA2ox6 | The Embryo MADS Domain Protein AGAMOUS-LIKE15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism | | 50.00% |
Motif_646 | AACAOSGLUB1 | AACA motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes | | 50.00% |
Motif_39 | CYTOSITECSHPRA | 13 bp sequence of unknown function found in cucumber hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See AS1LIKECSHPRA found in the same region; Also involved in light responsiveness | | 50.00% |
Motif_671 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 50.00% |
Motif_93 | RGATAOS | R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS | | 50.00% |
Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | | 50.00% |
Motif_45 | AGL25; SOC1 | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 50.00% |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | | 50.00% |
Motif_616 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 50.00% |
Motif_598 | SORLIP3AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 50.00% |