PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_123
Name: GT-1
Description: Molecular dissection of GT-1 from Arabidopsis

Sequence: AGGTAAATC
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	66.67%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	66.67%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	66.67%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	66.67%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	63.97%
Matrix_390	GT-1	Not Available	63.12%
Matrix_245	WRKY62; WRKY38	Not Available	62.16%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	61.98%
Matrix_289	WRKY25	Not Available	61.68%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	59.75%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	56.56%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	55.56%
Motif_342	POLASIG1	PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis	55.56%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	55.56%
Motif_62	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	55.56%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	55.56%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	55.56%
Motif_64	ABAREG2	Motif related to ABA regulation; Gene: sunflower helianthinin; transacting factor: bZIP	55.56%
Motif_442	GT2OSPHYA	GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter	55.56%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	55.56%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	55.56%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	55.56%
Motif_403	WINPSTPIIIK	Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato	55.56%
Motif_72	GADOWNAT	Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE	55.56%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	55.56%
Motif_370	TATABOX2	TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	55.56%
Motif_266	POLLEN1LELAT52	One of two co-dependent regulatory elements responsible for pollen specific activation of tomato lat52 gene; Found at -72 to -68 region;AGAAA and TCCACCATA are required for pollen specific expression; Also found in the promoter of tomato endo-beta-mannanase gene (LeMAN5) gene	55.56%
Motif_1	GT1CORE	Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex	55.56%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	55.56%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	55.56%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	55.56%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	55.56%
Motif_253	S1FSORPL21	S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity	55.56%
Motif_178	MRNA3ENDTAH3	Cis element in 3' end region of wheat histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeast	55.56%
Motif_554	AtLHY; AtCCA1	LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms	55.56%
Motif_562	-300CORE	TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors	55.56%
Motif_20	HSELIKENTGLN2	HSE-like sequence in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco	55.56%
Motif_4	NAP	An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves	55.56%
Matrix_262	ATGRP2B; CSDP2	Not Available	55.30%
Matrix_197	NAP	Not Available	55.27%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	55.25%
Matrix_170	AT5G47660	Not Available	54.98%
Matrix_470	WRKY18	Not Available	54.92%
Matrix_62	HAT5	Not Available	53.75%
Matrix_415	WRKY27	Not Available	53.48%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	52.16%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	52.12%
Matrix_220	WRKY18	Not Available	51.54%
Matrix_163	AT2G20110	Not Available	51.44%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	51.28%
Matrix_504	WRKY40	Not Available	51.02%
Matrix_279	HRS1	Not Available	50.68%
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	50.56%
Matrix_341	HMGA	Not Available	50.09%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.00%
Motif_627	ACGTABREMOTIFA2OSEM	Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis	50.00%
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	50.00%