PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_72
Name: CDF2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_501	DAG2	Not Available	88.86%
Matrix_255	cdf3	Not Available	85.76%
Matrix_227	AT1G64620	Not Available	84.87%
Matrix_181	Dof5.7	Not Available	81.04%
Matrix_411	DOF5.6	Not Available	69.76%
Matrix_286	GATA7	Not Available	67.84%
Matrix_80	BIM1	Not Available	67.27%
Matrix_99	DOF4.7	Not Available	67.09%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	66.68%
Matrix_226	GATA1	Not Available	65.88%
Matrix_259	AT1G50680; AT1G51120	Not Available	65.74%
Matrix_141	AT3G25990	Not Available	65.71%
Matrix_93	YAB5	Not Available	65.58%
Matrix_212	ATHB-12	Not Available	65.28%
Matrix_404	OBP4	Not Available	65.24%
Matrix_206	CUC1; ANAC100	Not Available	65.23%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	65.09%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	64.66%
Matrix_308	INO	Not Available	64.60%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	64.59%
Matrix_333	GATA3	Not Available	64.56%
Matrix_408	GATA12	Not Available	64.55%
Matrix_177	ADOF2	Not Available	64.54%
Matrix_195	GATA2; GATA4	Not Available	64.53%
Matrix_143	GATA14; GATA6; GATA5	Not Available	63.90%
Matrix_447	RVE1	Not Available	63.85%
Matrix_109	GBF3	Not Available	63.83%
Matrix_46	AT4G21895	Not Available	63.80%
Matrix_97	APRR2	Not Available	63.58%
Matrix_70	GATA26	Not Available	63.41%
Matrix_171	LBD3; LBD4	Not Available	63.35%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	63.14%
Matrix_463	HAT3.1	Not Available	63.00%
Matrix_491	AT1G68670; AT3G25790	Not Available	62.79%
Matrix_418	KNAT6; KNAT2	Not Available	62.72%
Matrix_67	GLK1	Not Available	62.51%
Matrix_114	EPR1; AT3G10113	Not Available	62.35%
Matrix_328	AT1G76580	Not Available	62.34%
Matrix_25	AP3	Not Available	62.26%
Matrix_151	ASIL1	Not Available	62.20%
Matrix_88	AHL12	Not Available	62.12%
Matrix_204	WOX13	Not Available	62.01%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	61.95%
Matrix_8	KAN1	Not Available	61.94%
Matrix_502	AT3G13040	Not Available	61.93%
Matrix_271	AT3G16350	Not Available	61.78%
Matrix_182	ATHB6	Not Available	61.71%
Matrix_254	MYB52	Not Available	61.70%
Matrix_444	AT1G19485; AT4G17950	Not Available	61.69%
Matrix_41	anac058	Not Available	61.53%
Matrix_132	SOC1	Not Available	61.37%
Matrix_434	ARR11	Not Available	61.34%
Matrix_136	SEP3	Not Available	61.33%
Matrix_185	AHL25	Not Available	61.29%
Matrix_296	GBF2	Not Available	61.27%
Matrix_487	AT1G29160	Not Available	61.23%
Matrix_424	MYB59	Not Available	61.12%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	61.10%
Matrix_78	AT3G45610	Not Available	61.08%
Matrix_69	AT2G03500	Not Available	61.00%
Matrix_412	GL1	Not Available	60.93%
Matrix_12	EIN3; EIL2	Not Available	60.89%
Matrix_313	ATMYB65; MYB33	Not Available	60.88%
Matrix_354	AHL12	Not Available	60.82%
Matrix_331	GBF1	Not Available	60.76%
Matrix_167	ZAT6	Not Available	60.44%
Matrix_59	AT4G00238; AT4G00250	Not Available	60.43%
Matrix_494	OBP4	Not Available	60.24%
Matrix_188	SPL4	Not Available	60.16%
Matrix_300	bZIP68; bZIP16	Not Available	60.09%
Matrix_168	AHL25	Not Available	59.91%
Matrix_125	AHL12	Not Available	59.76%
Matrix_505	GATA8	Not Available	59.71%
Matrix_236	CCA1	Not Available	59.71%
Matrix_423	AT3G04030	Not Available	59.66%
Matrix_101	ERF5	Not Available	59.66%
Matrix_258	WOX13	Not Available	59.63%
Matrix_435	ATHB51	Not Available	59.41%
Matrix_14	ZCW32; AT5G62610	Not Available	59.39%
Matrix_32	AHL25	Not Available	59.21%
Matrix_416	ASL5	Not Available	59.15%
Matrix_287	ERF2	Not Available	59.11%
Matrix_361	AT1G25550	Not Available	59.11%
Matrix_249	WRKY11	Not Available	59.10%
Matrix_519	ATDOF2.4	Not Available	59.05%
Matrix_157	LHY; RVE2	Not Available	59.00%
Matrix_162	AtPHR1	Not Available	58.93%
Matrix_37	GATA27	Not Available	58.86%
Matrix_210	ARR1	Not Available	58.79%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	58.76%
Matrix_4	ARR14	Not Available	58.70%
Matrix_461	ATHB12	Not Available	58.61%
Matrix_350	ARR14	Not Available	58.60%
Matrix_230	ARR11	Not Available	58.60%
Matrix_500	WRKY43	Not Available	58.46%
Matrix_160	RVE1	Not Available	58.36%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	58.31%
Matrix_241	HB-1; AT5G44180	Not Available	58.13%
Matrix_152	EIL1; AT5G65100	Not Available	57.85%
Matrix_122	ABF1; AREB2	Not Available	57.82%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	57.76%
Matrix_341	HMGA	Not Available	57.75%
Matrix_489	RAV1	Not Available	57.74%
Matrix_142	ZFP8	Not Available	57.69%
Matrix_16	AT3G04450; PHL1	Not Available	57.68%
Matrix_383	CCA1	Not Available	57.64%
Matrix_81	YAB1	Not Available	57.64%
Matrix_337	MYB46	Not Available	57.47%
Matrix_96	TMO6	Not Available	57.46%
Matrix_262	ATGRP2B; CSDP2	Not Available	57.40%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	57.33%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	57.25%
Matrix_71	ATHB7	Not Available	57.13%
Matrix_26	ATMYB3; MYB24	Not Available	57.11%
Matrix_324	AT2G01060	Not Available	57.11%
Matrix_315	MYB111	Not Available	56.89%
Matrix_521	AHL20	Not Available	56.85%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	56.82%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	56.64%
Matrix_362	DEAR3	Not Available	56.62%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	56.61%
Matrix_420	ANAC58	Not Available	56.57%
Matrix_302	HAT1; HAT2	Not Available	56.45%
Matrix_156	POC1	Not Available	56.45%
Matrix_307	RGL2; RGL3	Not Available	56.36%
Matrix_497	AP3	Not Available	56.31%
Matrix_54	AHL20	Not Available	56.21%
Matrix_129	ABF1	Not Available	56.20%
Matrix_209	RAP2.6	Not Available	56.19%
Matrix_336	AT5G08520	Not Available	55.92%
Matrix_85	SPL5	Not Available	55.79%
Matrix_380	ATMYR1	Not Available	55.70%
Matrix_106	AT5G47390	Not Available	55.68%
Motif_445	PDF2; ATML1	Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	55.66%
Matrix_87	AT1G19000	Not Available	55.65%
Matrix_38	SPL14	Not Available	55.58%
Matrix_421	GLK1	Not Available	55.47%
Matrix_374	AT5G07580; AT5G61590	Not Available	55.46%
Matrix_53	MYC3	Not Available	55.39%
Matrix_100	AT1G48610	Not Available	55.39%
Matrix_248	ZFP5	Not Available	55.37%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.36%
Matrix_429	KAN4	Not Available	55.35%
Matrix_17	WRKY22	Not Available	55.31%
Matrix_393	REM1	Not Available	55.14%
Matrix_299	PFG3	Not Available	55.04%
Matrix_327	ARR11	Not Available	54.95%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	54.88%
Matrix_391	AHL20	Not Available	54.83%
Matrix_475	AT5G64220	Not Available	54.82%
Matrix_518	AT2G21230	Not Available	54.77%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	54.76%
Matrix_120	BEE2	Not Available	54.73%
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	54.72%
Matrix_322	NST3; ANAC015; BRN2	Not Available	54.53%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	54.40%
Matrix_221	SPL7	Not Available	54.38%
Matrix_392	ARR2	Not Available	54.37%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	54.35%
Matrix_450	SPL7	Not Available	54.29%
Matrix_366	ARR14	Not Available	54.27%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	54.27%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	54.17%
Matrix_469	NAC041; NAC083	Not Available	54.17%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	54.06%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	54.06%
Matrix_431	ATHB21; HB-3	Not Available	54.00%
Matrix_74	LFY	Not Available	53.98%
Matrix_178	HSFB2A	Not Available	53.74%
Matrix_23	ANAC46	Not Available	53.65%
Matrix_483	ICU4	Not Available	53.59%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	53.49%
Matrix_452	MYB46	Not Available	53.43%
Matrix_84	AtGRF6	Not Available	53.43%
Matrix_35	YAB5; YAB3	Not Available	53.36%
Matrix_193	RAV1	Not Available	53.33%
Matrix_265	NGA3	Not Available	53.33%
Matrix_389	ILR3	Not Available	53.19%
Matrix_137	SPL1; SPL12	Not Available	53.10%
Matrix_493	AT1G22985; AT1G71130	Not Available	53.07%
Matrix_126	RBE	Not Available	53.00%
Matrix_465	MYC4	Not Available	52.97%
Matrix_113	ABI5	Not Available	52.81%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	52.77%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	52.69%
Matrix_495	HD-GL2-1; ANL2	Not Available	52.62%
Matrix_208	AP1	Not Available	52.61%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	52.58%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	52.58%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	52.31%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	52.18%
Matrix_330	MYC2; TT8	Not Available	52.16%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	52.15%
Matrix_75	WRKY29	Not Available	52.12%
Matrix_407	AP1	Not Available	52.10%
Matrix_471	KAN4	Not Available	52.10%
Matrix_79	FUS3	Not Available	52.05%
Matrix_21	HSFC1	Not Available	51.98%
Matrix_335	HSFB2A	Not Available	51.93%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	51.91%
Motif_423	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.90%
Matrix_309	FLC	Not Available	51.84%
Matrix_441	ATHB5	Not Available	51.80%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.78%
Matrix_116	ANAC55	Not Available	51.77%
Matrix_135	ABI3	Not Available	51.74%
Matrix_425	TIFY2A	Not Available	51.64%
Matrix_503	AT2G37430; AT3G53600	Not Available	51.57%
Matrix_20	ANAC030; NST1; NAC066	Not Available	51.52%
Matrix_442	AT5G62260	Not Available	51.51%
Matrix_27	ATAIB; ATNIG1	Not Available	51.30%
Matrix_233	MYC3	Not Available	51.29%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	51.28%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	51.09%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	51.06%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	51.02%
Matrix_239	AT5G04390	Not Available	51.02%
Matrix_6	AT1G70000	Not Available	51.01%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	50.98%
Matrix_355	ERF10; ERF11	Not Available	50.93%
Matrix_323	BIM3	Not Available	50.86%
Matrix_91	CRF3	Not Available	50.83%
Matrix_261	ATERF-1	Not Available	50.82%
Matrix_382	AT3G04850	Not Available	50.79%
Matrix_321	HRD	Not Available	50.78%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	50.77%
Matrix_451	STY1	Not Available	50.76%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	50.73%
Matrix_379	RHL41	Not Available	50.63%
Matrix_415	WRKY27	Not Available	50.62%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	50.58%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	50.56%
Matrix_472	ZN_C2_H2	Not Available	50.55%
Matrix_62	HAT5	Not Available	50.55%
Matrix_243	RAP2.12; RAP2.2	Not Available	50.43%
Matrix_449	BIM2	Not Available	50.43%
Matrix_319	TEM1	Not Available	50.43%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	50.39%
Matrix_436	AT3G49930; AZF1	Not Available	50.33%
Matrix_343	AT2G33710	Not Available	50.19%
Matrix_520	ARR14	Not Available	50.18%
Matrix_174	ZAT2	Not Available	50.16%
Matrix_211	MYB3	Not Available	50.02%