PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_504
Name: WRKY40
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_197	NAP	Not Available	86.89%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	85.17%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	84.29%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	82.91%
Matrix_289	WRKY25	Not Available	82.01%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	81.29%
Matrix_415	WRKY27	Not Available	79.51%
Matrix_245	WRKY62; WRKY38	Not Available	78.27%
Matrix_3	WRKY48	Not Available	70.69%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	69.71%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	69.11%
Matrix_370	WRKY50; WRKY51	Not Available	68.73%
Matrix_505	GATA8	Not Available	68.28%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	67.29%
Matrix_243	RAP2.12; RAP2.2	Not Available	67.15%
Matrix_390	GT-1	Not Available	66.92%
Matrix_102	WRKY21	Not Available	65.99%
Matrix_500	WRKY43	Not Available	65.95%
Matrix_384	ATWRKY17	Not Available	65.68%
Matrix_37	GATA27	Not Available	65.54%
Matrix_75	WRKY29	Not Available	65.53%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	65.32%
Matrix_334	AT3G23230	Not Available	65.03%
Matrix_85	SPL5	Not Available	64.92%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	64.62%
Matrix_165	KNAT1	Not Available	63.45%
Matrix_249	WRKY11	Not Available	63.34%
Matrix_220	WRKY18	Not Available	62.95%
Matrix_78	AT3G45610	Not Available	61.72%
Matrix_17	WRKY22	Not Available	61.61%
Matrix_84	AtGRF6	Not Available	61.35%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	61.16%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	61.05%
Matrix_100	AT1G48610	Not Available	60.79%
Matrix_35	YAB5; YAB3	Not Available	60.31%
Matrix_248	ZFP5	Not Available	59.91%
Matrix_470	WRKY18	Not Available	59.55%
Matrix_139	OBF5	Not Available	59.31%
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	59.13%
Matrix_281	TCP13	Not Available	58.64%
Matrix_137	SPL1; SPL12	Not Available	58.26%
Matrix_195	GATA2; GATA4	Not Available	58.16%
Motif_26	GRF7	Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A	57.99%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	57.83%
Motif_122	TGTCACACMCUCUMISIN	TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene	57.60%
Matrix_502	AT3G13040	Not Available	57.38%
Matrix_96	TMO6	Not Available	57.21%
Matrix_218	TIFY2B; TIFY1	Not Available	57.18%
Matrix_142	ZFP8	Not Available	57.17%
Matrix_241	HB-1; AT5G44180	Not Available	57.11%
Matrix_492	ETT	Not Available	56.98%
Matrix_91	CRF3	Not Available	56.94%
Matrix_177	ADOF2	Not Available	56.78%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	56.68%
Matrix_261	ATERF-1	Not Available	56.58%
Matrix_311	TGA1	Not Available	56.56%
Matrix_253	ETT	Not Available	56.49%
Matrix_425	TIFY2A	Not Available	56.47%
Matrix_321	HRD	Not Available	56.14%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	55.99%
Matrix_379	RHL41	Not Available	55.87%
Matrix_493	AT1G22985; AT1G71130	Not Available	55.81%
Matrix_374	AT5G07580; AT5G61590	Not Available	55.61%
Matrix_408	GATA12	Not Available	55.50%
Matrix_506	DRNL; ATERF-4	Not Available	55.26%
Matrix_128	TGA2	Not Available	55.22%
Matrix_99	DOF4.7	Not Available	54.89%
Matrix_432	AT1G77920	Not Available	54.65%
Matrix_112	TBP2; TFIID-1	Not Available	54.51%
Matrix_503	AT2G37430; AT3G53600	Not Available	54.43%
Matrix_239	AT5G04390	Not Available	54.38%
Matrix_294	MEE35	Not Available	54.27%
Matrix_333	GATA3	Not Available	54.26%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	54.22%
Motif_307	TATCCAYMOTIFOSRAMY3D	TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression	54.18%
Matrix_226	GATA1	Not Available	54.00%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	53.87%
Matrix_126	RBE	Not Available	53.68%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	53.65%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	53.60%
Matrix_76	GATA10	Not Available	53.58%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.57%
Matrix_94	TCP5	Not Available	53.47%
Matrix_152	EIL1; AT5G65100	Not Available	53.47%
Matrix_436	AT3G49930; AZF1	Not Available	53.43%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	53.29%
Matrix_482	AT2G25650; AT4G00270	Not Available	53.13%
Matrix_411	DOF5.6	Not Available	53.01%
Matrix_198	STZ; C2H2; AZF3	Not Available	52.85%
Matrix_513	SOL1; TSO1; TCX2	Not Available	52.84%
Motif_453	HEXMOTIFTAH3H4	hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site	52.82%
Motif_57	ABREOSRAB21	ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene	52.78%
Matrix_86	CRF5; CRF6; CRF4	Not Available	52.56%
Matrix_166	TGA4	Not Available	52.51%
Matrix_341	HMGA	Not Available	52.49%
Matrix_46	AT4G21895	Not Available	52.48%
Matrix_328	AT1G76580	Not Available	52.41%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	52.38%
Matrix_274	EDF3	Not Available	52.37%
Matrix_70	GATA26	Not Available	52.24%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	52.23%
Matrix_188	SPL4	Not Available	52.18%
Matrix_52	ZAT18	Not Available	52.11%
Matrix_426	CRF1; CRF2	Not Available	52.05%
Matrix_447	RVE1	Not Available	52.02%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	51.95%
Matrix_512	HAT3	Not Available	51.88%
Matrix_522	GATA11; GATA13	Not Available	51.88%
Matrix_507	TCP3	Not Available	51.63%
Matrix_457	TGA2	Not Available	51.56%
Matrix_82	TCP17	Not Available	51.49%
Matrix_163	AT2G20110	Not Available	51.46%
Motif_562	-300CORE	TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors	51.39%
Motif_543	TATCCACHVAL21	TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response	51.31%
Matrix_12	EIN3; EIL2	Not Available	51.23%
Matrix_450	SPL7	Not Available	51.18%
Matrix_519	ATDOF2.4	Not Available	51.15%
Motif_525	CRTDREHVCBF2	Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature	51.12%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	51.02%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	50.96%
Matrix_397	GT2L	Not Available	50.95%
Matrix_38	SPL14	Not Available	50.91%
Matrix_170	AT5G47660	Not Available	50.90%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	50.87%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	50.80%
Motif_15	AMYBOX2	amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley	50.73%
Motif_150	RBCSCONSENSUS	rbcS general consensus sequence; AATCCAA or AATCCAAC	50.69%
Matrix_221	SPL7	Not Available	50.58%
Matrix_279	HRS1	Not Available	50.43%
Matrix_169	E2F1	Not Available	50.05%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	50.00%