PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_502
Name: AT3G13040
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_226	GATA1	Not Available	81.87%
Matrix_392	ARR2	Not Available	79.65%
Matrix_195	GATA2; GATA4	Not Available	78.91%
Matrix_286	GATA7	Not Available	78.54%
Matrix_230	ARR11	Not Available	78.49%
Matrix_350	ARR14	Not Available	78.19%
Matrix_505	GATA8	Not Available	78.07%
Matrix_408	GATA12	Not Available	77.82%
Matrix_271	AT3G16350	Not Available	77.18%
Matrix_162	AtPHR1	Not Available	76.78%
Matrix_16	AT3G04450; PHL1	Not Available	76.67%
Matrix_37	GATA27	Not Available	76.41%
Matrix_447	RVE1	Not Available	75.76%
Matrix_67	GLK1	Not Available	74.62%
Matrix_69	AT2G03500	Not Available	74.51%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	74.31%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	73.79%
Matrix_491	AT1G68670; AT3G25790	Not Available	73.77%
Matrix_324	AT2G01060	Not Available	73.68%
Matrix_434	ARR11	Not Available	73.47%
Matrix_361	AT1G25550	Not Available	73.21%
Matrix_463	HAT3.1	Not Available	72.71%
Matrix_70	GATA26	Not Available	71.28%
Matrix_308	INO	Not Available	71.08%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	70.92%
Matrix_106	AT5G47390	Not Available	70.52%
Matrix_336	AT5G08520	Not Available	70.40%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	70.13%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	69.90%
Matrix_152	EIL1; AT5G65100	Not Available	69.17%
Matrix_227	AT1G64620	Not Available	68.89%
Matrix_157	LHY; RVE2	Not Available	68.87%
Matrix_12	EIN3; EIL2	Not Available	68.75%
Matrix_333	GATA3	Not Available	68.63%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	68.38%
Matrix_259	AT1G50680; AT1G51120	Not Available	68.35%
Matrix_80	BIM1	Not Available	68.11%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	68.01%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	67.98%
Matrix_204	WOX13	Not Available	67.90%
Matrix_418	KNAT6; KNAT2	Not Available	67.80%
Matrix_59	AT4G00238; AT4G00250	Not Available	67.73%
Matrix_311	TGA1	Not Available	67.52%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	67.38%
Matrix_97	APRR2	Not Available	67.35%
Matrix_210	ARR1	Not Available	66.93%
Matrix_182	ATHB6	Not Available	66.77%
Matrix_143	GATA14; GATA6; GATA5	Not Available	66.60%
Matrix_423	AT3G04030	Not Available	66.50%
Matrix_355	ERF10; ERF11	Not Available	66.42%
Matrix_6	AT1G70000	Not Available	66.33%
Matrix_201	AT1G74840	Not Available	66.30%
Matrix_507	TCP3	Not Available	66.28%
Matrix_279	HRS1	Not Available	66.26%
Matrix_4	ARR14	Not Available	66.10%
Matrix_504	WRKY40	Not Available	65.91%
Matrix_366	ARR14	Not Available	65.68%
Matrix_328	AT1G76580	Not Available	65.53%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	65.47%
Matrix_151	ASIL1	Not Available	65.27%
Matrix_85	SPL5	Not Available	65.16%
Matrix_99	DOF4.7	Not Available	65.05%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	65.00%
Matrix_169	E2F1	Not Available	64.92%
Matrix_109	GBF3	Not Available	64.84%
Matrix_141	AT3G25990	Not Available	64.48%
Matrix_17	WRKY22	Not Available	64.48%
Matrix_415	WRKY27	Not Available	64.44%
Matrix_46	AT4G21895	Not Available	64.33%
Matrix_212	ATHB-12	Not Available	64.27%
Matrix_296	GBF2	Not Available	64.26%
Matrix_50	ATERF14; AT5G43410	Not Available	63.88%
Matrix_181	Dof5.7	Not Available	63.76%
Matrix_450	SPL7	Not Available	63.75%
Matrix_188	SPL4	Not Available	63.37%
Matrix_128	TGA2	Not Available	63.23%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	63.21%
Matrix_185	AHL25	Not Available	63.14%
Matrix_206	CUC1; ANAC100	Not Available	63.06%
Matrix_500	WRKY43	Not Available	62.88%
Matrix_489	RAV1	Not Available	62.86%
Matrix_380	ATMYR1	Not Available	62.81%
Matrix_260	CAMTA3	Not Available	62.67%
Matrix_425	TIFY2A	Not Available	62.64%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	62.58%
Matrix_197	NAP	Not Available	62.51%
Matrix_354	AHL12	Not Available	62.49%
Matrix_142	ZFP8	Not Available	62.41%
Matrix_78	AT3G45610	Not Available	62.41%
Matrix_406	ATERF-7	Not Available	62.29%
Matrix_521	AHL20	Not Available	62.20%
Matrix_91	CRF3	Not Available	62.09%
Matrix_341	HMGA	Not Available	62.08%
Matrix_218	TIFY2B; TIFY1	Not Available	61.97%
Matrix_72	CDF2	Not Available	61.93%
Matrix_300	bZIP68; bZIP16	Not Available	61.83%
Matrix_493	AT1G22985; AT1G71130	Not Available	61.80%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	61.59%
Matrix_63	ARR10	Not Available	61.45%
Matrix_416	ASL5	Not Available	61.42%
Matrix_249	WRKY11	Not Available	61.36%
Matrix_75	WRKY29	Not Available	61.25%
Matrix_512	HAT3	Not Available	61.24%
Matrix_261	ATERF-1	Not Available	61.14%
Matrix_166	TGA4	Not Available	61.11%
Matrix_431	ATHB21; HB-3	Not Available	61.01%
Matrix_114	EPR1; AT3G10113	Not Available	60.87%
Matrix_38	SPL14	Not Available	60.81%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	60.78%
Matrix_177	ADOF2	Not Available	60.74%
Matrix_57	WIN1; SHN3; SHN2	Not Available	60.68%
Matrix_243	RAP2.12; RAP2.2	Not Available	60.57%
Matrix_374	AT5G07580; AT5G61590	Not Available	60.48%
Matrix_331	GBF1	Not Available	60.47%
Matrix_101	ERF5	Not Available	60.24%
Matrix_26	ATMYB3; MYB24	Not Available	60.13%
Matrix_203	GATA9; GATA12	Not Available	60.09%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	59.98%
Matrix_421	GLK1	Not Available	59.97%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	59.96%
Matrix_236	CCA1	Not Available	59.94%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	59.93%
Matrix_76	GATA10	Not Available	59.90%
Matrix_462	ATERF-8	Not Available	59.89%
Matrix_135	ABI3	Not Available	59.88%
Matrix_391	AHL20	Not Available	59.87%
Matrix_221	SPL7	Not Available	59.83%
Matrix_420	ANAC58	Not Available	59.80%
Matrix_432	AT1G77920	Not Available	59.75%
Matrix_3	WRKY48	Not Available	59.66%
Matrix_322	NST3; ANAC015; BRN2	Not Available	59.53%
Matrix_126	RBE	Not Available	59.49%
Matrix_171	LBD3; LBD4	Not Available	59.46%
Matrix_370	WRKY50; WRKY51	Not Available	59.23%
Matrix_494	OBP4	Not Available	59.23%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	59.21%
Matrix_144	AT5G08330; AT5G23280	Not Available	59.20%
Matrix_518	AT2G21230	Not Available	59.07%
Matrix_334	AT3G23230	Not Available	59.05%
Matrix_248	ZFP5	Not Available	59.05%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	58.85%
Matrix_522	GATA11; GATA13	Not Available	58.81%
Matrix_299	PFG3	Not Available	58.80%
Matrix_8	KAN1	Not Available	58.72%
Matrix_14	ZCW32; AT5G62610	Not Available	58.69%
Matrix_53	MYC3	Not Available	58.69%
Matrix_453	EIL3	Not Available	58.68%
Matrix_503	AT2G37430; AT3G53600	Not Available	58.65%
Matrix_79	FUS3	Not Available	58.57%
Matrix_168	AHL25	Not Available	58.52%
Matrix_379	RHL41	Not Available	58.49%
Matrix_40	TCP2	Not Available	58.44%
Matrix_411	DOF5.6	Not Available	58.42%
Matrix_84	AtGRF6	Not Available	58.34%
Matrix_404	OBP4	Not Available	58.31%
Matrix_409	DEAR3	Not Available	58.29%
Matrix_277	RAP2.6	Not Available	58.28%
Matrix_315	MYB111	Not Available	58.26%
Matrix_501	DAG2	Not Available	58.03%
Matrix_239	AT5G04390	Not Available	57.99%
Matrix_313	ATMYB65; MYB33	Not Available	57.98%
Matrix_137	SPL1; SPL12	Not Available	57.87%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	57.86%
Matrix_93	YAB5	Not Available	57.83%
Matrix_327	ARR11	Not Available	57.81%
Matrix_87	AT1G19000	Not Available	57.77%
Matrix_307	RGL2; RGL3	Not Available	57.75%
Matrix_429	KAN4	Not Available	57.71%
Matrix_198	STZ; C2H2; AZF3	Not Available	57.67%
Matrix_287	ERF2	Not Available	57.62%
Matrix_254	MYB52	Not Available	57.47%
Matrix_255	cdf3	Not Available	57.46%
Matrix_412	GL1	Not Available	57.27%
Matrix_41	anac058	Not Available	57.20%
Matrix_367	REM1	Not Available	57.16%
Motif_322	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	57.10%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	57.06%
Matrix_100	AT1G48610	Not Available	56.94%
Matrix_193	RAV1	Not Available	56.85%
Matrix_265	NGA3	Not Available	56.85%
Matrix_389	ILR3	Not Available	56.85%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	56.73%
Matrix_436	AT3G49930; AZF1	Not Available	56.62%
Matrix_165	KNAT1	Not Available	56.51%
Matrix_348	AT5G51910	Not Available	56.51%
Matrix_440	LFY	Not Available	56.50%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	56.45%
Matrix_52	ZAT18	Not Available	56.37%
Matrix_444	AT1G19485; AT4G17950	Not Available	56.30%
Matrix_471	KAN4	Not Available	56.24%
Matrix_88	AHL12	Not Available	56.22%
Matrix_35	YAB5; YAB3	Not Available	56.19%
Matrix_347	WOX14; WOX10	Not Available	55.92%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	55.89%
Matrix_125	AHL12	Not Available	55.86%
Matrix_288	RAP2.3	Not Available	55.76%
Matrix_363	RAP2.3	Not Available	55.69%
Matrix_384	ATWRKY17	Not Available	55.66%
Matrix_424	MYB59	Not Available	55.49%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	55.38%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	55.37%
Matrix_427	ZAT14	Not Available	55.18%
Matrix_178	HSFB2A	Not Available	54.88%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	54.74%
Matrix_21	HSFC1	Not Available	54.71%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	54.57%
Matrix_42	AT2G45680	Not Available	54.50%
Matrix_337	MYB46	Not Available	54.48%
Matrix_156	POC1	Not Available	54.46%
Matrix_224	ERF1	Not Available	54.40%
Matrix_274	EDF3	Not Available	54.36%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	54.33%
Matrix_397	GT2L	Not Available	54.33%
Matrix_120	BEE2	Not Available	54.29%
Matrix_31	SPL1	Not Available	54.26%
Matrix_241	HB-1; AT5G44180	Not Available	54.23%
Matrix_289	WRKY25	Not Available	54.15%
Matrix_520	ARR14	Not Available	54.08%
Matrix_23	ANAC46	Not Available	53.86%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	53.86%
Motif_20	HSELIKENTGLN2	HSE-like sequence in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco	53.80%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	53.70%
Matrix_303	ATWOX13	Not Available	53.65%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	53.55%
Motif_29	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.54%
Matrix_102	WRKY21	Not Available	53.48%
Matrix_9	AT5G04760	Not Available	53.47%
Matrix_32	AHL25	Not Available	53.42%
Matrix_455	MYB111	Not Available	53.39%
Matrix_258	WOX13	Not Available	53.39%
Motif_52	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.38%
Matrix_130	TCP16	Not Available	53.22%
Matrix_483	ICU4	Not Available	53.14%
Matrix_465	MYC4	Not Available	53.12%
Matrix_113	ABI5	Not Available	53.10%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.10%
Matrix_122	ABF1; AREB2	Not Available	53.03%
Matrix_110	ATABI4; AT3G57600	Not Available	53.02%
Matrix_330	MYC2; TT8	Not Available	52.74%
Matrix_321	HRD	Not Available	52.61%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	52.59%
Matrix_211	MYB3	Not Available	52.55%
Matrix_430	TOE2	Not Available	52.50%
Matrix_499	ARR18	Not Available	52.48%
Matrix_96	TMO6	Not Available	52.39%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	52.30%
Matrix_461	ATHB12	Not Available	52.09%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.08%
Matrix_220	WRKY18	Not Available	52.03%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	51.94%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	51.87%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	51.86%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.71%
Matrix_519	ATDOF2.4	Not Available	51.69%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	51.64%
Matrix_435	ATHB51	Not Available	51.62%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.60%
Matrix_290	AP2	Not Available	51.56%
Matrix_433	ATERF1	Not Available	51.48%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.46%
Matrix_472	ZN_C2_H2	Not Available	51.39%
Matrix_112	TBP2; TFIID-1	Not Available	51.36%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	51.24%
Matrix_470	WRKY18	Not Available	51.10%
Matrix_225	MYB52	Not Available	51.09%
Matrix_213	ATHB22	Not Available	51.08%
Matrix_293	WRKY38	Not Available	51.01%
Matrix_119	RRTF1	Not Available	51.00%
Matrix_245	WRKY62; WRKY38	Not Available	50.95%
Matrix_302	HAT1; HAT2	Not Available	50.93%
Matrix_448	ATERF6	Not Available	50.92%
Matrix_382	AT3G04850	Not Available	50.90%
Matrix_81	YAB1	Not Available	50.89%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	50.75%
Matrix_174	ZAT2	Not Available	50.73%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	50.68%
Matrix_196	TCP20; AT5G41030	Not Available	50.68%
Matrix_446	LBD16	Not Available	50.65%
Matrix_329	WRKY12	Not Available	50.54%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.54%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	50.54%
Matrix_281	TCP13	Not Available	50.49%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	50.48%
Matrix_323	BIM3	Not Available	50.46%
Matrix_373	E2FE	Not Available	50.45%
Matrix_449	BIM2	Not Available	50.38%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.36%
Matrix_153	AP2	Not Available	50.34%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	50.33%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	50.26%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	50.21%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	50.21%
Matrix_175	Dof5.7	Not Available	50.21%
Matrix_253	ETT	Not Available	50.00%