PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_490
Name: AtMYB77; ATMYB44
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_346	AtMYB70; MYB73	Not Available	87.15%
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	69.85%
Motif_336	MYBMOUSE	Binding site for mouse c-myb protein	67.63%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	64.03%
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	62.44%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	60.95%
Motif_344	MSACRCYM	MSA (M-specific activator) motif in Catharanthus roseus B-type cyclin (CYM) promoter; Essential for M phase-specific expression; Found at -66 to -58	60.87%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	60.46%
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	59.39%
Motif_421	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	58.62%
Motif_251	SUP	The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif	58.62%
Motif_626	ACGTTBOX	T-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIF	58.26%
Matrix_313	ATMYB65; MYB33	Not Available	58.25%
Motif_354	VSF1PVGRP18	VSF-1 binding site in French bean grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; VS-1 found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression	56.79%
Motif_339	ABRE-like binding site motif	Molecular responses to dehydration and low temperature	55.57%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	55.35%
Matrix_65	POC1; PIL1	Not Available	55.05%
Matrix_436	AT3G49930; AZF1	Not Available	54.47%
Matrix_484	ATERF13	Not Available	54.45%
Motif_33	ACGTCBOX	C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site	54.16%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	53.83%
Matrix_45	DRN	Not Available	53.78%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	53.62%
Matrix_300	bZIP68; bZIP16	Not Available	53.54%
Motif_312	OCTAMERMOTIFTAH3H4	Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes	53.47%
Matrix_27	ATAIB; ATNIG1	Not Available	53.08%
Matrix_198	STZ; C2H2; AZF3	Not Available	52.76%
Matrix_7	PIF4	Not Available	52.66%
Matrix_296	GBF2	Not Available	52.34%
Matrix_239	AT5G04390	Not Available	51.93%
Motif_86	ACGTABOX	A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression	51.92%
Matrix_318	ATHB16	Not Available	51.89%
Motif_357	NTBBF1ARROLB	NtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin induction	51.78%
Motif_567	T/GBOXATPIN2	T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif	51.76%
Motif_308	SP8BFIBSP8AIB	One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	51.76%
Matrix_147	ERF3; AT1G80580	Not Available	51.63%
Motif_210	REBETALGLHCB21	REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation	51.22%
Matrix_503	AT2G37430; AT3G53600	Not Available	51.11%
Matrix_360	ORA59	Not Available	50.91%
Matrix_295	ERF1	Not Available	50.84%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	50.83%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	50.72%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	50.63%
Matrix_379	RHL41	Not Available	50.60%
Matrix_170	AT5G47660	Not Available	50.55%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	50.22%
Motif_536	TBOXATGAPB	Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	50.22%
Motif_179	CACGTGMOTIF; BES1; PIF4; PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	50.03%