PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_469
Name: NAC041; NAC083
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_41	anac058	Not Available	81.41%
Matrix_206	CUC1; ANAC100	Not Available	76.18%
Matrix_424	MYB59	Not Available	73.01%
Matrix_460	NAM; anac025; ATNAC2	Not Available	72.44%
Matrix_337	MYB46	Not Available	71.47%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	71.27%
Matrix_516	ANAC038; ANAC079	Not Available	69.53%
Matrix_315	MYB111	Not Available	68.66%
Matrix_299	PFG3	Not Available	65.68%
Matrix_404	OBP4	Not Available	65.09%
Matrix_188	SPL4	Not Available	64.60%
Matrix_85	SPL5	Not Available	64.15%
Matrix_137	SPL1; SPL12	Not Available	63.98%
Matrix_12	EIN3; EIL2	Not Available	63.70%
Matrix_307	RGL2; RGL3	Not Available	63.50%
Matrix_80	BIM1	Not Available	63.36%
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	63.01%
Matrix_14	ZCW32; AT5G62610	Not Available	62.97%
Matrix_221	SPL7	Not Available	62.74%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	62.63%
Matrix_331	GBF1	Not Available	62.38%
Matrix_225	MYB52	Not Available	62.28%
Matrix_20	ANAC030; NST1; NAC066	Not Available	62.14%
Matrix_308	INO	Not Available	61.33%
Matrix_418	KNAT6; KNAT2	Not Available	61.25%
Matrix_109	GBF3	Not Available	61.15%
Matrix_273	ANAC55	Not Available	61.06%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	61.05%
Matrix_156	POC1	Not Available	60.82%
Matrix_313	ATMYB65; MYB33	Not Available	60.46%
Matrix_211	MYB3	Not Available	60.45%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	59.90%
Matrix_455	MYB111	Not Available	59.78%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	59.77%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	59.70%
Matrix_93	YAB5	Not Available	59.53%
Matrix_494	OBP4	Not Available	59.43%
Matrix_227	AT1G64620	Not Available	58.84%
Matrix_401	MYB55	Not Available	58.74%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	58.64%
Matrix_450	SPL7	Not Available	58.56%
Matrix_31	SPL1	Not Available	57.97%
Matrix_209	RAP2.6	Not Available	57.77%
Matrix_388	SNZ; SMZ; TOE2	Not Available	57.69%
Matrix_475	AT5G64220	Not Available	57.64%
Matrix_322	NST3; ANAC015; BRN2	Not Available	57.48%
Matrix_122	ABF1; AREB2	Not Available	57.28%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	57.19%
Matrix_197	NAP	Not Available	56.68%
Matrix_71	ATHB7	Not Available	56.62%
Motif_430	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	56.36%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	56.34%
Matrix_234	RAP2.3	Not Available	56.26%
Matrix_302	HAT1; HAT2	Not Available	56.17%
Matrix_287	ERF2	Not Available	56.16%
Matrix_323	BIM3	Not Available	56.11%
Matrix_504	WRKY40	Not Available	56.06%
Matrix_59	AT4G00238; AT4G00250	Not Available	56.00%
Matrix_489	RAV1	Not Available	55.98%
Matrix_415	WRKY27	Not Available	55.88%
Matrix_352	LEC2	Not Available	55.82%
Matrix_169	E2F1	Not Available	55.79%
Matrix_101	ERF5	Not Available	55.70%
Matrix_380	ATMYR1	Not Available	55.60%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	55.39%
Matrix_461	ATHB12	Not Available	55.34%
Motif_255	B2GMAUX28	B2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif	55.32%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	55.29%
Motif_662	MYB26PS	Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragon	55.25%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	55.24%
Motif_213	ZML2	The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis	55.19%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	55.04%
Matrix_182	ATHB6	Not Available	55.00%
Matrix_271	AT3G16350	Not Available	54.78%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	54.69%
Motif_165	AP3SV40	AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2	54.68%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	54.66%
Matrix_449	BIM2	Not Available	54.65%
Matrix_6	AT1G70000	Not Available	54.61%
Matrix_300	bZIP68; bZIP16	Not Available	54.57%
Matrix_343	AT2G33710	Not Available	54.56%
Matrix_513	SOL1; TSO1; TCX2	Not Available	54.56%
Matrix_501	DAG2	Not Available	54.52%
Matrix_374	AT5G07580; AT5G61590	Not Available	54.49%
Matrix_106	AT5G47390	Not Available	54.33%
Motif_487	ACIIIPVPAL2	ACIII element found at -246 to -238 of bean PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene	54.25%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	54.25%
Matrix_72	CDF2	Not Available	54.17%
Matrix_120	BEE2	Not Available	54.12%
Matrix_285	DDF1	Not Available	54.10%
Matrix_296	GBF2	Not Available	54.02%
Matrix_150	UNE10; PIF7	Not Available	53.87%
Matrix_151	ASIL1	Not Available	53.85%
Motif_376	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	53.84%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	53.80%
Matrix_389	ILR3	Not Available	53.77%
Motif_378	WRKY6	Targets of AtWRKY6 regulation during plant senescence and pathogen defense	53.67%
Matrix_233	MYC3	Not Available	53.67%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	53.64%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.61%
Motif_541	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	53.58%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	53.57%
Motif_601	D3GMAUX28	D3; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -750 and -760; A/T-rich sequence	53.57%
Matrix_330	MYC2; TT8	Not Available	53.51%
Matrix_60	AT1G01260; AT5G57150	Not Available	53.48%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	53.41%
Matrix_228	TGA2	Not Available	53.33%
Matrix_282	bZIP60	Not Available	53.33%
Matrix_463	HAT3.1	Not Available	53.14%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	53.08%
Matrix_465	MYC4	Not Available	53.07%
Matrix_259	AT1G50680; AT1G51120	Not Available	53.07%
Matrix_1	TOE2	Not Available	53.07%
Matrix_320	MYC4	Not Available	53.06%
Matrix_335	HSFB2A	Not Available	52.87%
Motif_62	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	52.87%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	52.69%
Matrix_33	SPL11; SPL10; SPL2	Not Available	52.67%
Matrix_423	AT3G04030	Not Available	52.62%
Matrix_382	AT3G04850	Not Available	52.61%
Motif_354	VSF1PVGRP18	VSF-1 binding site in French bean grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; VS-1 found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression	52.51%
Matrix_321	HRD	Not Available	52.41%
Matrix_453	EIL3	Not Available	52.41%
Matrix_78	AT3G45610	Not Available	52.37%
Motif_634	ANAERO4CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)	52.35%
Matrix_286	GATA7	Not Available	52.31%
Matrix_416	ASL5	Not Available	52.29%
Matrix_145	GBF4; AT5G44080	Not Available	52.28%
Matrix_46	AT4G21895	Not Available	52.26%
Matrix_84	AtGRF6	Not Available	52.22%
Matrix_171	LBD3; LBD4	Not Available	52.17%
Matrix_243	RAP2.12; RAP2.2	Not Available	52.17%
Motif_596	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	52.13%
Matrix_212	ATHB-12	Not Available	52.12%
Matrix_480	BES1	Not Available	51.97%
Matrix_493	AT1G22985; AT1G71130	Not Available	51.90%
Matrix_333	GATA3	Not Available	51.88%
Matrix_52	ZAT18	Not Available	51.87%
Matrix_495	HD-GL2-1; ANL2	Not Available	51.81%
Matrix_422	TOE1	Not Available	51.76%
Matrix_70	GATA26	Not Available	51.72%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.71%
Matrix_472	ZN_C2_H2	Not Available	51.67%
Matrix_437	MYC2	Not Available	51.61%
Motif_282	D4GMAUX28	D4; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes	51.58%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	51.58%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	51.56%
Matrix_362	DEAR3	Not Available	51.47%
Matrix_274	EDF3	Not Available	51.45%
Matrix_447	RVE1	Not Available	51.44%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	51.44%
Motif_583	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	51.38%
Motif_560	GLUTECOREOS	Core site required for binding of the trans-acting factor in the promoter region of rice glutelin (type 2 glutelin gene family)	51.33%
Matrix_17	WRKY22	Not Available	51.31%
Matrix_129	ABF1	Not Available	51.30%
Matrix_520	ARR14	Not Available	51.03%
Matrix_226	GATA1	Not Available	50.95%
Matrix_116	ANAC55	Not Available	50.88%
Matrix_240	AT4G29000	Not Available	50.85%
Matrix_456	bZIP60	Not Available	50.84%
Matrix_142	ZFP8	Not Available	50.82%
Matrix_10	STY1	Not Available	50.78%
Matrix_328	AT1G76580	Not Available	50.78%
Matrix_146	ORA47	Not Available	50.77%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.75%
Matrix_143	GATA14; GATA6; GATA5	Not Available	50.64%
Matrix_427	ZAT14	Not Available	50.63%
Matrix_272	DEAR4	Not Available	50.54%
Matrix_473	RRTF1	Not Available	50.49%
Motif_212	GARE2OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	50.47%
Motif_86	ACGTABOX	A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression	50.47%
Matrix_75	WRKY29	Not Available	50.40%
Matrix_190	ATERF1	Not Available	50.40%
Matrix_249	WRKY11	Not Available	50.38%
Matrix_435	ATHB51	Not Available	50.36%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	50.33%
Matrix_490	AtMYB77; ATMYB44	Not Available	50.27%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	50.27%
Matrix_492	ETT	Not Available	50.25%
Matrix_91	CRF3	Not Available	50.25%
Matrix_3	WRKY48	Not Available	50.24%
Motif_440	TGA1 binding site motif	Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	50.20%
Matrix_173	ZAP1	Not Available	50.19%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.18%
Matrix_406	ATERF-7	Not Available	50.11%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	50.09%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	50.09%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	50.08%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	50.08%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	50.01%