PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_440
Name: LFY
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	72.52%
Matrix_449	BIM2	Not Available	71.72%
Motif_9	RBENTGA3	rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs	71.58%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	71.47%
Matrix_465	MYC4	Not Available	70.83%
Matrix_330	MYC2; TT8	Not Available	70.71%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	70.44%
Matrix_323	BIM3	Not Available	70.40%
Matrix_120	BEE2	Not Available	69.88%
Matrix_55	PIF3	Not Available	68.20%
Matrix_389	ILR3	Not Available	68.14%
Matrix_129	ABF1	Not Available	67.74%
Matrix_122	ABF1; AREB2	Not Available	66.36%
Matrix_83	PRR5	Not Available	66.06%
Matrix_156	POC1	Not Available	65.44%
Matrix_480	BES1	Not Available	65.39%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	65.02%
Matrix_115	AGL15	Not Available	64.57%
Matrix_204	WOX13	Not Available	64.43%
Motif_644	ABREDISTBBNNAPA	dist B (distal portion of B-box) found in napA gene of Brassica napus; Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	64.01%
Matrix_153	AP2	Not Available	63.68%
Matrix_472	ZN_C2_H2	Not Available	63.35%
Matrix_109	GBF3	Not Available	63.34%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	62.72%
Matrix_141	AT3G25990	Not Available	62.67%
Matrix_331	GBF1	Not Available	62.33%
Matrix_226	GATA1	Not Available	62.15%
Matrix_174	ZAT2	Not Available	62.11%
Matrix_247	PIF3	Not Available	61.56%
Matrix_269	FHY3/FAR1	Not Available	61.27%
Matrix_14	ZCW32; AT5G62610	Not Available	61.19%
Matrix_104	PI	Not Available	60.88%
Matrix_296	GBF2	Not Available	60.73%
Matrix_300	bZIP68; bZIP16	Not Available	60.71%
Matrix_502	AT3G13040	Not Available	60.45%
Matrix_332	SPT; ALC	Not Available	60.43%
Matrix_259	AT1G50680; AT1G51120	Not Available	60.24%
Matrix_286	GATA7	Not Available	60.17%
Matrix_227	AT1G64620	Not Available	59.93%
Matrix_195	GATA2; GATA4	Not Available	59.93%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	59.84%
Matrix_143	GATA14; GATA6; GATA5	Not Available	59.40%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	59.38%
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	59.13%
Matrix_339	bHLH104	Not Available	59.10%
Matrix_418	KNAT6; KNAT2	Not Available	59.07%
Matrix_206	CUC1; ANAC100	Not Available	58.84%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	58.79%
Matrix_80	BIM1	Not Available	58.62%
Matrix_463	HAT3.1	Not Available	58.51%
Matrix_416	ASL5	Not Available	58.49%
Matrix_408	GATA12	Not Available	58.39%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	58.18%
Matrix_467	RAV1	Not Available	58.17%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	58.17%
Matrix_477	RAV1	Not Available	58.17%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	58.17%
Matrix_430	TOE2	Not Available	58.17%
Matrix_322	NST3; ANAC015; BRN2	Not Available	58.16%
Matrix_181	Dof5.7	Not Available	58.02%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	57.88%
Matrix_413	RAV1	Not Available	57.75%
Matrix_298	RAV1	Not Available	57.75%
Matrix_333	GATA3	Not Available	57.67%
Matrix_271	AT3G16350	Not Available	57.62%
Matrix_182	ATHB6	Not Available	57.58%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	57.32%
Matrix_308	INO	Not Available	57.30%
Matrix_97	APRR2	Not Available	57.20%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	57.10%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	57.09%
Matrix_479	TOE1	Not Available	57.08%
Matrix_37	GATA27	Not Available	56.95%
Motif_639	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	56.86%
Matrix_70	GATA26	Not Available	56.66%
Matrix_4	ARR14	Not Available	56.44%
Matrix_210	ARR1	Not Available	56.37%
Matrix_518	AT2G21230	Not Available	56.37%
Matrix_354	AHL12	Not Available	56.34%
Matrix_265	NGA3	Not Available	56.21%
Matrix_193	RAV1	Not Available	56.21%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	56.17%
Matrix_347	WOX14; WOX10	Not Available	56.10%
Matrix_499	ARR18	Not Available	56.05%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	55.98%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	55.96%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	55.83%
Matrix_369	AT2G18300	Not Available	55.64%
Matrix_336	AT5G08520	Not Available	55.63%
Matrix_60	AT1G01260; AT5G57150	Not Available	55.60%
Matrix_491	AT1G68670; AT3G25790	Not Available	55.54%
Matrix_177	ADOF2	Not Available	55.51%
Matrix_233	MYC3	Not Available	55.33%
Matrix_438	AtbZIP63	Not Available	55.33%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	55.29%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	55.26%
Matrix_150	UNE10; PIF7	Not Available	55.25%
Matrix_151	ASIL1	Not Available	55.24%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	55.16%
Matrix_456	bZIP60	Not Available	55.11%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	55.08%
Matrix_59	AT4G00238; AT4G00250	Not Available	55.06%
Matrix_116	ANAC55	Not Available	55.05%
Matrix_85	SPL5	Not Available	55.04%
Matrix_21	HSFC1	Not Available	55.03%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.02%
Matrix_93	YAB5	Not Available	55.01%
Motif_421	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	54.99%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	54.97%
Matrix_77	PRR5	Not Available	54.96%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	54.93%
Matrix_411	DOF5.6	Not Available	54.90%
Matrix_273	ANAC55	Not Available	54.89%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	54.88%
Matrix_211	MYB3	Not Available	54.80%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.75%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	54.72%
Matrix_188	SPL4	Not Available	54.66%
Matrix_311	TGA1	Not Available	54.61%
Matrix_203	GATA9; GATA12	Not Available	54.60%
Motif_331	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	54.57%
Matrix_178	HSFB2A	Not Available	54.57%
Matrix_41	anac058	Not Available	54.53%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	54.51%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	54.41%
Matrix_320	MYC4	Not Available	54.32%
Matrix_420	ANAC58	Not Available	54.26%
Matrix_72	CDF2	Not Available	54.26%
Matrix_13	HAT5	Not Available	54.25%
Matrix_136	SEP3	Not Available	54.25%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.20%
Matrix_64	PIF5	Not Available	54.19%
Matrix_243	RAP2.12; RAP2.2	Not Available	54.18%
Matrix_8	KAN1	Not Available	54.16%
Matrix_69	AT2G03500	Not Available	54.11%
Matrix_431	ATHB21; HB-3	Not Available	54.10%
Matrix_87	AT1G19000	Not Available	54.07%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	54.05%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	54.04%
Motif_251	SUP	The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif	54.03%
Matrix_26	ATMYB3; MYB24	Not Available	54.01%
Matrix_505	GATA8	Not Available	53.99%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	53.98%
Matrix_406	ATERF-7	Not Available	53.97%
Matrix_7	PIF4	Not Available	53.84%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	53.79%
Matrix_157	LHY; RVE2	Not Available	53.78%
Matrix_352	LEC2	Not Available	53.78%
Matrix_48	PI	Not Available	53.75%
Matrix_171	LBD3; LBD4	Not Available	53.70%
Motif_589	ARECOREZMGAPC4	Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction	53.66%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	53.64%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	53.61%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	53.60%
Matrix_225	MYB52	Not Available	53.59%
Matrix_307	RGL2; RGL3	Not Available	53.58%
Matrix_303	ATWOX13	Not Available	53.53%
Matrix_126	RBE	Not Available	53.50%
Matrix_392	ARR2	Not Available	53.50%
Matrix_114	EPR1; AT3G10113	Not Available	53.49%
Matrix_437	MYC2	Not Available	53.41%
Matrix_12	EIN3; EIL2	Not Available	53.34%
Matrix_134	ABF1	Not Available	53.30%
Matrix_404	OBP4	Not Available	53.30%
Matrix_361	AT1G25550	Not Available	53.23%
Matrix_436	AT3G49930; AZF1	Not Available	53.19%
Matrix_145	GBF4; AT5G44080	Not Available	53.19%
Motif_244	ABRE-like binding site motif	Not Available	53.17%
Matrix_162	AtPHR1	Not Available	53.17%
Motif_239	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	53.15%
Motif_133	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	53.14%
Matrix_258	WOX13	Not Available	53.13%
Matrix_324	AT2G01060	Not Available	53.12%
Matrix_254	MYB52	Not Available	53.09%
Matrix_447	RVE1	Not Available	53.09%
Matrix_99	DOF4.7	Not Available	53.07%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	53.05%
Matrix_46	AT4G21895	Not Available	53.00%
Matrix_476	bHLH115; bHLH34	Not Available	52.93%
Matrix_230	ARR11	Not Available	52.92%
Matrix_152	EIL1; AT5G65100	Not Available	52.90%
Matrix_16	AT3G04450; PHL1	Not Available	52.90%
Matrix_512	HAT3	Not Available	52.87%
Matrix_17	WRKY22	Not Available	52.86%
Matrix_78	AT3G45610	Not Available	52.84%
Matrix_407	AP1	Not Available	52.79%
Matrix_255	cdf3	Not Available	52.78%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	52.77%
Matrix_135	ABI3	Not Available	52.74%
Matrix_198	STZ; C2H2; AZF3	Not Available	52.68%
Matrix_346	AtMYB70; MYB73	Not Available	52.67%
Matrix_212	ATHB-12	Not Available	52.66%
Matrix_101	ERF5	Not Available	52.65%
Matrix_501	DAG2	Not Available	52.65%
Matrix_435	ATHB51	Not Available	52.61%
Matrix_397	GT2L	Not Available	52.59%
Matrix_503	AT2G37430; AT3G53600	Not Available	52.57%
Matrix_128	TGA2	Not Available	52.57%
Matrix_421	GLK1	Not Available	52.55%
Matrix_462	ATERF-8	Not Available	52.55%
Matrix_380	ATMYR1	Not Available	52.55%
Matrix_176	MYB98	Not Available	52.54%
Matrix_446	LBD16	Not Available	52.52%
Motif_574	MYB2 binding site motif	MYB transcription factors in plants	52.49%
Motif_671	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.45%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	52.43%
Matrix_497	AP3	Not Available	52.38%
Matrix_106	AT5G47390	Not Available	52.31%
Matrix_490	AtMYB77; ATMYB44	Not Available	52.26%
Matrix_350	ARR14	Not Available	52.18%
Matrix_471	KAN4	Not Available	52.16%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	51.99%
Matrix_434	ARR11	Not Available	51.96%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	51.93%
Matrix_264	ATAREB1	Not Available	51.92%
Matrix_425	TIFY2A	Not Available	51.90%
Matrix_461	ATHB12	Not Available	51.89%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	51.79%
Matrix_113	ABI5	Not Available	51.77%
Matrix_494	OBP4	Not Available	51.77%
Matrix_29	AP1	Not Available	51.76%
Matrix_328	AT1G76580	Not Available	51.75%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.73%
Matrix_489	RAV1	Not Available	51.67%
Matrix_239	AT5G04390	Not Available	51.58%
Matrix_88	AHL12	Not Available	51.57%
Matrix_313	ATMYB65; MYB33	Not Available	51.49%
Matrix_393	REM1	Not Available	51.48%
Matrix_71	ATHB7	Not Available	51.46%
Matrix_137	SPL1; SPL12	Not Available	51.42%
Matrix_67	GLK1	Not Available	51.41%
Matrix_349	CDC5	Not Available	51.38%
Matrix_187	CDC5	Not Available	51.38%
Matrix_53	MYC3	Not Available	51.37%
Matrix_379	RHL41	Not Available	51.35%
Matrix_260	CAMTA3	Not Available	51.29%
Motif_668	TCA1MOTIF	TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter	51.27%
Matrix_424	MYB59	Not Available	51.18%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	51.14%
Matrix_166	TGA4	Not Available	51.14%
Matrix_23	ANAC46	Not Available	51.01%
Matrix_6	AT1G70000	Not Available	50.92%
Motif_330	ANAERO5CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO5CONSENSUS by the PLACEdb curator	50.87%
Motif_645	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.82%
Matrix_396	AP3	Not Available	50.81%
Matrix_432	AT1G77920	Not Available	50.78%
Matrix_353	HAT5	Not Available	50.77%
Matrix_423	AT3G04030	Not Available	50.73%
Matrix_287	ERF2	Not Available	50.71%
Matrix_159	TEM2	Not Available	50.71%
Matrix_452	MYB46	Not Available	50.54%
Matrix_519	ATDOF2.4	Not Available	50.52%
Matrix_160	RVE1	Not Available	50.37%
Matrix_75	WRKY29	Not Available	50.35%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	50.27%
Matrix_20	ANAC030; NST1; NAC066	Not Available	50.22%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	50.21%
Matrix_221	SPL7	Not Available	50.14%
Matrix_142	ZFP8	Not Available	50.09%
Motif_465	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	50.08%
Matrix_10	STY1	Not Available	50.05%
Motif_517	LEAFYATAG	Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis	50.05%
Matrix_315	MYB111	Not Available	50.00%