PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_431
Name: ATHB21; HB-3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_483	ICU4	Not Available	79.78%
Matrix_259	AT1G50680; AT1G51120	Not Available	72.28%
Matrix_444	AT1G19485; AT4G17950	Not Available	71.96%
Matrix_70	GATA26	Not Available	71.32%
Matrix_168	AHL25	Not Available	70.87%
Matrix_17	WRKY22	Not Available	70.59%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	70.46%
Matrix_380	ATMYR1	Not Available	70.33%
Matrix_333	GATA3	Not Available	69.90%
Matrix_75	WRKY29	Not Available	69.82%
Matrix_313	ATMYB65; MYB33	Not Available	69.18%
Matrix_212	ATHB-12	Not Available	68.85%
Matrix_341	HMGA	Not Available	68.61%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	68.58%
Matrix_88	AHL12	Not Available	68.27%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	68.19%
Matrix_114	EPR1; AT3G10113	Not Available	68.11%
Matrix_12	EIN3; EIL2	Not Available	67.96%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	67.86%
Matrix_423	AT3G04030	Not Available	67.82%
Matrix_441	ATHB5	Not Available	67.82%
Matrix_461	ATHB12	Not Available	67.76%
Matrix_3	WRKY48	Not Available	67.73%
Matrix_143	GATA14; GATA6; GATA5	Not Available	67.35%
Matrix_8	KAN1	Not Available	67.26%
Matrix_453	EIL3	Not Available	67.20%
Matrix_32	AHL25	Not Available	67.08%
Matrix_384	ATWRKY17	Not Available	67.06%
Matrix_370	WRKY50; WRKY51	Not Available	66.92%
Matrix_328	AT1G76580	Not Available	66.63%
Matrix_37	GATA27	Not Available	66.43%
Matrix_141	AT3G25990	Not Available	66.24%
Matrix_142	ZFP8	Not Available	65.70%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	65.62%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	65.56%
Matrix_182	ATHB6	Not Available	65.43%
Matrix_102	WRKY21	Not Available	65.29%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	65.10%
Matrix_210	ARR1	Not Available	65.04%
Matrix_71	ATHB7	Not Available	65.00%
Matrix_14	ZCW32; AT5G62610	Not Available	64.98%
Matrix_4	ARR14	Not Available	64.94%
Matrix_308	INO	Not Available	64.67%
Matrix_151	ASIL1	Not Available	64.61%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	64.61%
Matrix_53	MYC3	Not Available	64.56%
Matrix_38	SPL14	Not Available	64.43%
Matrix_59	AT4G00238; AT4G00250	Not Available	64.42%
Matrix_220	WRKY18	Not Available	64.39%
Matrix_495	HD-GL2-1; ANL2	Not Available	64.07%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	64.00%
Matrix_46	AT4G21895	Not Available	63.98%
Matrix_240	AT4G29000	Not Available	63.96%
Matrix_227	AT1G64620	Not Available	63.92%
Matrix_206	CUC1; ANAC100	Not Available	63.88%
Matrix_286	GATA7	Not Available	63.86%
Matrix_302	HAT1; HAT2	Not Available	63.84%
Matrix_93	YAB5	Not Available	63.58%
Matrix_54	AHL20	Not Available	63.48%
Matrix_505	GATA8	Not Available	63.37%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	63.36%
Matrix_435	ATHB51	Not Available	63.03%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	62.96%
Matrix_185	AHL25	Not Available	62.92%
Matrix_62	HAT5	Not Available	62.92%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	62.90%
Matrix_491	AT1G68670; AT3G25790	Not Available	62.80%
Matrix_125	AHL12	Not Available	62.74%
Matrix_489	RAV1	Not Available	62.47%
Matrix_99	DOF4.7	Not Available	62.44%
Matrix_416	ASL5	Not Available	62.36%
Matrix_97	APRR2	Not Available	62.28%
Matrix_226	GATA1	Not Available	62.26%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	62.22%
Matrix_181	Dof5.7	Not Available	62.10%
Matrix_318	ATHB16	Not Available	62.07%
Matrix_293	WRKY38	Not Available	61.85%
Matrix_452	MYB46	Not Available	61.77%
Matrix_382	AT3G04850	Not Available	61.60%
Matrix_69	AT2G03500	Not Available	61.53%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	61.53%
Matrix_329	WRKY12	Not Available	61.34%
Matrix_101	ERF5	Not Available	61.32%
Matrix_502	AT3G13040	Not Available	61.01%
Matrix_391	AHL20	Not Available	60.81%
Matrix_521	AHL20	Not Available	60.79%
Matrix_162	AtPHR1	Not Available	60.74%
Matrix_78	AT3G45610	Not Available	60.72%
Matrix_9	AT5G04760	Not Available	60.70%
Matrix_415	WRKY27	Not Available	60.48%
Matrix_296	GBF2	Not Available	60.47%
Matrix_361	AT1G25550	Not Available	60.47%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	60.15%
Matrix_109	GBF3	Not Available	59.93%
Matrix_389	ILR3	Not Available	59.93%
Matrix_16	AT3G04450; PHL1	Not Available	59.73%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	59.65%
Matrix_171	LBD3; LBD4	Not Available	59.58%
Matrix_300	bZIP68; bZIP16	Not Available	59.54%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	59.29%
Matrix_175	Dof5.7	Not Available	59.28%
Matrix_457	TGA2	Not Available	59.25%
Matrix_322	NST3; ANAC015; BRN2	Not Available	59.23%
Matrix_120	BEE2	Not Available	59.18%
Matrix_287	ERF2	Not Available	59.12%
Matrix_418	KNAT6; KNAT2	Not Available	59.12%
Matrix_311	TGA1	Not Available	58.83%
Matrix_248	ZFP5	Not Available	58.79%
Matrix_470	WRKY18	Not Available	58.76%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	58.58%
Matrix_427	ZAT14	Not Available	58.55%
Matrix_157	LHY; RVE2	Not Available	58.46%
Matrix_41	anac058	Not Available	58.39%
Matrix_463	HAT3.1	Not Available	58.39%
Matrix_434	ARR11	Not Available	58.38%
Matrix_324	AT2G01060	Not Available	58.36%
Matrix_195	GATA2; GATA4	Not Available	58.35%
Matrix_465	MYC4	Not Available	58.32%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	58.29%
Matrix_197	NAP	Not Available	58.27%
Matrix_81	YAB1	Not Available	58.05%
Matrix_271	AT3G16350	Not Available	58.05%
Matrix_336	AT5G08520	Not Available	58.03%
Matrix_392	ARR2	Not Available	58.02%
Matrix_126	RBE	Not Available	58.01%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	58.01%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	57.76%
Matrix_239	AT5G04390	Not Available	57.74%
Matrix_177	ADOF2	Not Available	57.63%
Matrix_330	MYC2; TT8	Not Available	57.54%
Matrix_152	EIL1; AT5G65100	Not Available	57.50%
Matrix_425	TIFY2A	Not Available	57.43%
Matrix_429	KAN4	Not Available	57.41%
Matrix_376	WRKY45	Not Available	57.34%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	57.30%
Matrix_399	TGA1	Not Available	57.27%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	57.24%
Matrix_198	STZ; C2H2; AZF3	Not Available	57.23%
Matrix_374	AT5G07580; AT5G61590	Not Available	57.11%
Matrix_87	AT1G19000	Not Available	56.96%
Matrix_408	GATA12	Not Available	56.95%
Matrix_100	AT1G48610	Not Available	56.93%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	56.76%
Matrix_503	AT2G37430; AT3G53600	Not Available	56.62%
Matrix_112	TBP2; TFIID-1	Not Available	56.61%
Matrix_188	SPL4	Not Available	56.61%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	56.52%
Matrix_249	WRKY11	Not Available	56.51%
Matrix_436	AT3G49930; AZF1	Not Available	56.41%
Matrix_379	RHL41	Not Available	56.36%
Matrix_331	GBF1	Not Available	56.32%
Matrix_176	MYB98	Not Available	56.21%
Matrix_512	HAT3	Not Available	56.15%
Matrix_160	RVE1	Not Available	56.12%
Matrix_80	BIM1	Not Available	56.04%
Matrix_178	HSFB2A	Not Available	56.01%
Matrix_84	AtGRF6	Not Available	55.94%
Matrix_63	ARR10	Not Available	55.90%
Matrix_501	DAG2	Not Available	55.83%
Matrix_128	TGA2	Not Available	55.78%
Matrix_204	WOX13	Not Available	55.77%
Matrix_241	HB-1; AT5G44180	Not Available	55.73%
Matrix_354	AHL12	Not Available	55.46%
Matrix_411	DOF5.6	Not Available	55.15%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	55.11%
Matrix_383	CCA1	Not Available	55.07%
Matrix_352	LEC2	Not Available	55.00%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	54.96%
Matrix_35	YAB5; YAB3	Not Available	54.96%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	54.96%
Matrix_230	ARR11	Not Available	54.84%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	54.71%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.60%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	54.58%
Matrix_13	HAT5	Not Available	54.53%
Matrix_67	GLK1	Not Available	54.46%
Matrix_166	TGA4	Not Available	54.39%
Matrix_243	RAP2.12; RAP2.2	Not Available	54.38%
Matrix_96	TMO6	Not Available	54.36%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	54.30%
Matrix_366	ARR14	Not Available	54.04%
Matrix_72	CDF2	Not Available	54.00%
Matrix_274	EDF3	Not Available	53.94%
Matrix_26	ATMYB3; MYB24	Not Available	53.94%
Matrix_420	ANAC58	Not Available	53.89%
Matrix_500	WRKY43	Not Available	53.86%
Matrix_350	ARR14	Not Available	53.78%
Matrix_51	LFY	Not Available	53.63%
Matrix_355	ERF10; ERF11	Not Available	53.53%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	53.48%
Matrix_406	ATERF-7	Not Available	53.45%
Matrix_518	AT2G21230	Not Available	53.43%
Matrix_61	ATCBF3	Not Available	53.41%
Matrix_135	ABI3	Not Available	53.41%
Matrix_349	CDC5	Not Available	53.40%
Matrix_187	CDC5	Not Available	53.40%
Matrix_115	AGL15	Not Available	53.36%
Matrix_447	RVE1	Not Available	53.36%
Motif_361	SORLREP4AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; Common in circadian-regulated promoters; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.31%
Matrix_347	WOX14; WOX10	Not Available	53.31%
Matrix_421	GLK1	Not Available	53.30%
Matrix_265	NGA3	Not Available	53.28%
Matrix_193	RAV1	Not Available	53.28%
Matrix_21	HSFC1	Not Available	53.24%
Matrix_236	CCA1	Not Available	53.19%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	53.17%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	53.16%
Matrix_504	WRKY40	Not Available	53.11%
Matrix_174	ZAT2	Not Available	53.08%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.04%
Matrix_129	ABF1	Not Available	52.90%
Matrix_167	ZAT6	Not Available	52.77%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	52.75%
Matrix_323	BIM3	Not Available	52.73%
Matrix_148	WRKY60	Not Available	52.72%
Matrix_449	BIM2	Not Available	52.64%
Matrix_52	ZAT18	Not Available	52.54%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	52.53%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	52.50%
Matrix_321	HRD	Not Available	52.49%
Matrix_279	HRS1	Not Available	52.48%
Matrix_432	AT1G77920	Not Available	52.43%
Matrix_442	AT5G62260	Not Available	52.29%
Matrix_221	SPL7	Not Available	52.22%
Matrix_439	AP3	Not Available	52.19%
Matrix_446	LBD16	Not Available	52.19%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	52.15%
Matrix_404	OBP4	Not Available	52.03%
Matrix_91	CRF3	Not Available	52.02%
Matrix_490	AtMYB77; ATMYB44	Not Available	51.98%
Matrix_307	RGL2; RGL3	Not Available	51.96%
Matrix_213	ATHB22	Not Available	51.94%
Motif_442	GT2OSPHYA	GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter	51.82%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	51.76%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	51.75%
Matrix_493	AT1G22985; AT1G71130	Not Available	51.56%
Matrix_462	ATERF-8	Not Available	51.49%
Matrix_218	TIFY2B; TIFY1	Not Available	51.48%
Matrix_92	AT1G33760	Not Available	51.35%
Matrix_139	OBF5	Not Available	51.35%
Matrix_472	ZN_C2_H2	Not Available	51.30%
Matrix_159	TEM2	Not Available	51.29%
Matrix_319	TEM1	Not Available	51.28%
Matrix_85	SPL5	Not Available	51.24%
Matrix_523	FUSCA3	Not Available	51.19%
Matrix_494	OBP4	Not Available	51.13%
Matrix_57	WIN1; SHN3; SHN2	Not Available	51.10%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	51.09%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	51.08%
Matrix_122	ABF1; AREB2	Not Available	50.91%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	50.90%
Matrix_23	ANAC46	Not Available	50.88%
Matrix_346	AtMYB70; MYB73	Not Available	50.86%
Matrix_205	AGL15	Not Available	50.83%
Matrix_255	cdf3	Not Available	50.78%
Motif_256	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	50.59%
Matrix_261	ATERF-1	Not Available	50.59%
Matrix_401	MYB55	Not Available	50.50%
Matrix_253	ETT	Not Available	50.48%
Matrix_140	ATHB5	DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	50.40%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.22%
Matrix_438	AtbZIP63	Not Available	50.22%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.16%
Matrix_397	GT2L	Not Available	50.14%
Matrix_196	TCP20; AT5G41030	Not Available	50.10%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	50.08%
Matrix_203	GATA9; GATA12	Not Available	50.07%