| Matrix_426 | CRF1; CRF2 | Not Available | | 72.50% |
| Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 72.29% |
| Matrix_252 | RAP2.6 | Not Available | | 71.49% |
| Matrix_272 | DEAR4 | Not Available | | 70.83% |
| Matrix_473 | RRTF1 | Not Available | | 70.70% |
| Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 70.32% |
| Matrix_190 | ATERF1 | Not Available | | 69.56% |
| Matrix_146 | ORA47 | Not Available | | 69.54% |
| Matrix_506 | DRNL; ATERF-4 | Not Available | | 68.48% |
| Matrix_234 | RAP2.3 | Not Available | | 67.71% |
| Matrix_378 | ATERF1 | Not Available | | 67.65% |
| Matrix_297 | TCP15 | Not Available | | 65.61% |
| Matrix_343 | AT2G33710 | Not Available | | 63.23% |
| Matrix_232 | TCP23 | Not Available | | 62.58% |
| Matrix_507 | TCP3 | Not Available | | 61.53% |
| Matrix_406 | ATERF-7 | Not Available | | 61.45% |
| Matrix_110 | ATABI4; AT3G57600 | Not Available | | 61.18% |
| Matrix_462 | ATERF-8 | Not Available | | 60.70% |
| Matrix_216 | TCP16 | Not Available | | 60.67% |
| Matrix_334 | AT3G23230 | Not Available | | 60.54% |
| Matrix_360 | ORA59 | Not Available | | 60.45% |
| Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 60.18% |
| Matrix_472 | ZN_C2_H2 | Not Available | | 58.69% |
| Matrix_344 | ATERF15; AT4G18450 | Not Available | | 58.39% |
| Matrix_294 | MEE35 | Not Available | | 58.17% |
| Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 58.07% |
| Motif_239 | MYB2 | Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 57.95% |
| Motif_636 | AMMORESVDCRNIA1 | Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation | | 57.92% |
| Motif_13 | E2F-varient binding site motif | A genome-wide identification of E2F-regulated genes in Arabidopsis | | 57.91% |
| Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 57.84% |
| Motif_577 | GRAZMRAB28 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130 | | 57.78% |
| Matrix_281 | TCP13 | Not Available | | 57.77% |
| Motif_632 | EREGCC | GCC box in ERE (ethylene responsive element); Ethylene-responsive region of tobacco (N.t.) chitinase gene contains two copies of the GCC-box; ERF2 and ERF4 enhanced the GCC box-mediated transcription; ERF3 reduced the transcription of the reporter gene in tobacco protoplasts; Binding site of AtEBP; Pti4/5/6 proteins from tomato which belong to the ERF family activate the expression of GCC box-containing PR genes; ERF3 was found to interact with NtUBC2, a ubiquitin-conjugating enzyme; Identification of an ethylene-responsive region in the promoter of a tobacco class I chitinase gene | | 57.73% |
| Matrix_295 | ERF1 | Not Available | | 57.69% |
| Matrix_484 | ATERF13 | Not Available | | 57.67% |
| Motif_264 | GCBP2ZMGAPC4 | Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285 | | 57.61% |
| Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 57.54% |
| Matrix_5 | AT5G51190; ERF104 | Not Available | | 57.46% |
| Matrix_174 | ZAT2 | Not Available | | 57.39% |
| Matrix_224 | ERF1 | Not Available | | 57.25% |
| Matrix_42 | AT2G45680 | Not Available | | 57.20% |
| Motif_463 | GRAZMRAB17 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab17 gene from maize; Important for transcription in leaves but not in embryos | | 56.53% |
| Matrix_169 | E2F1 | Not Available | | 56.50% |
| Matrix_339 | bHLH104 | Not Available | | 56.38% |
| Matrix_82 | TCP17 | Not Available | | 55.83% |
| Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 55.77% |
| Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 55.61% |
| Matrix_40 | TCP2 | Not Available | | 55.40% |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 55.32% |
| Matrix_101 | ERF5 | Not Available | | 55.14% |
| Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 55.11% |
| Matrix_457 | TGA2 | Not Available | | 55.11% |
| Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 55.06% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 55.02% |
| Matrix_94 | TCP5 | Not Available | | 54.99% |
| Matrix_348 | AT5G51910 | Not Available | | 54.96% |
| Matrix_138 | RRTF1 | Not Available | | 54.34% |
| Matrix_209 | RAP2.6 | Not Available | | 54.24% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 54.05% |
| Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 53.98% |
| Matrix_147 | ERF3; AT1G80580 | Not Available | | 53.84% |
| Motif_372 | E2FAT | E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression | | 53.62% |
| Matrix_45 | DRN | Not Available | | 53.60% |
| Motif_106 | PR2GCNT | GC element conserved in the 5' upstream regions of group 2 PR protein genes (beta-1,3-glucanase (GLN2), chitinase (CHN17, CHN50)) of tobacco | | 53.55% |
| Matrix_287 | ERF2 | Not Available | | 53.44% |
| Matrix_362 | DEAR3 | Not Available | | 53.37% |
| Motif_331 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 53.33% |
| Matrix_180 | SPL1 | Not Available | | 53.27% |
| Matrix_517 | ERF12 | Not Available | | 53.19% |
| Motif_650 | SITEIIAOSPCNA | Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4 | | 52.93% |
| Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 52.87% |
| Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 52.73% |
| Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 52.62% |
| Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 52.48% |
| Matrix_363 | RAP2.3 | Not Available | | 52.39% |
| Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 52.32% |
| Matrix_261 | ATERF-1 | Not Available | | 52.23% |
| Motif_583 | AtbZIP1 | The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 52.18% |
| Matrix_288 | RAP2.3 | Not Available | | 51.78% |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 51.76% |
| Matrix_119 | RRTF1 | Not Available | | 51.71% |
| Matrix_91 | CRF3 | Not Available | | 51.61% |
| Matrix_285 | DDF1 | Not Available | | 51.56% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 51.47% |
| Matrix_418 | KNAT6; KNAT2 | Not Available | | 51.47% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 51.32% |
| Matrix_196 | TCP20; AT5G41030 | Not Available | | 51.25% |
| Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | | 51.20% |
| Matrix_3 | WRKY48 | Not Available | | 51.12% |
| Matrix_130 | TCP16 | Not Available | | 51.10% |
| Motif_435 | E2FBNTRNR | E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation | | 51.00% |
| Matrix_416 | ASL5 | Not Available | | 50.94% |
| Matrix_409 | DEAR3 | Not Available | | 50.61% |
| Matrix_21 | HSFC1 | Not Available | | 50.18% |
| Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | | 50.14% |
| Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | | 50.12% |
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