PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_347
Name: WOX14; WOX10
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_303	ATWOX13	Not Available	92.74%
Matrix_512	HAT3	Not Available	83.21%
Matrix_182	ATHB6	Not Available	69.98%
Motif_41	ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	66.08%
Matrix_425	TIFY2A	Not Available	65.72%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	65.34%
Matrix_71	ATHB7	Not Available	64.43%
Matrix_461	ATHB12	Not Available	64.24%
Matrix_218	TIFY2B; TIFY1	Not Available	63.97%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	62.44%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	61.64%
Matrix_302	HAT1; HAT2	Not Available	61.45%
Matrix_165	KNAT1	Not Available	60.90%
Matrix_505	GATA8	Not Available	60.52%
Matrix_435	ATHB51	Not Available	60.52%
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	59.89%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	59.56%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	59.20%
Matrix_516	ANAC038; ANAC079	Not Available	58.92%
Motif_639	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	57.78%
Matrix_177	ADOF2	Not Available	57.22%
Matrix_318	ATHB16	Not Available	57.20%
Matrix_78	AT3G45610	Not Available	56.74%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	56.62%
Motif_207	MAMMALENHAN	Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene	56.14%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	56.00%
Motif_530	CPBCSPOR	The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene	55.60%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	55.40%
Motif_401	ARR1AT	ARR1-binding element found in Arabidopsis; ARR1 is a response regulator; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene	55.11%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	55.07%
Matrix_62	HAT5	Not Available	54.89%
Matrix_411	DOF5.6	Not Available	54.84%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	54.79%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	54.62%
Motif_584	UPRE-III(bZIP60)	The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis	54.56%
Matrix_76	GATA10	Not Available	54.37%
Matrix_37	GATA27	Not Available	54.36%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.32%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	54.26%
Matrix_408	GATA12	Not Available	54.21%
Motif_80	AP1SV40	AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	54.20%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	54.07%
Matrix_126	RBE	Not Available	53.65%
Matrix_274	EDF3	Not Available	53.58%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	53.34%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	53.30%
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	53.24%
Matrix_35	YAB5; YAB3	Not Available	53.10%
Matrix_522	GATA11; GATA13	Not Available	52.96%
Matrix_519	ATDOF2.4	Not Available	52.92%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	52.37%
Matrix_279	HRS1	Not Available	52.30%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	52.20%
Motif_108	ROOTMOTIFTAPOX1	Motif found both in promoters of rolD	52.18%
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	52.15%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	52.02%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.96%
Matrix_152	EIL1; AT5G65100	Not Available	51.82%
Matrix_243	RAP2.12; RAP2.2	Not Available	51.78%
Motif_183	TRANSINITDICOTS	Context sequence of translational initiation codon in dicots	51.14%
Matrix_14	ZCW32; AT5G62610	Not Available	50.81%
Matrix_195	GATA2; GATA4	Not Available	50.66%
Motif_216	PYRIMIDINEBOXHVEPB1	Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction	50.66%
Matrix_239	AT5G04390	Not Available	50.59%
Motif_88	MYB2AT	Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis	50.58%
Motif_667	TATABOXOSPAL	Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter	50.20%
Matrix_503	AT2G37430; AT3G53600	Not Available	50.15%
Matrix_379	RHL41	Not Available	50.11%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	50.01%