PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_32
Name: AHL25
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_54	AHL20	Not Available	89.43%
Matrix_168	AHL25	Not Available	87.17%
Matrix_185	AHL25	Not Available	84.68%
Matrix_88	AHL12	Not Available	82.84%
Matrix_125	AHL12	Not Available	82.83%
Matrix_444	AT1G19485; AT4G17950	Not Available	82.07%
Matrix_521	AHL20	Not Available	79.26%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	76.06%
Matrix_391	AHL20	Not Available	75.31%
Matrix_212	ATHB-12	Not Available	74.37%
Matrix_382	AT3G04850	Not Available	70.91%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	70.44%
Matrix_93	YAB5	Not Available	68.61%
Matrix_240	AT4G29000	Not Available	67.73%
Matrix_341	HMGA	Not Available	67.66%
Matrix_431	ATHB21; HB-3	Not Available	67.08%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	66.75%
Matrix_12	EIN3; EIL2	Not Available	66.48%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	65.72%
Matrix_17	WRKY22	Not Available	65.45%
Matrix_495	HD-GL2-1; ANL2	Not Available	65.42%
Matrix_435	ATHB51	Not Available	65.38%
Matrix_442	AT5G62260	Not Available	65.32%
Matrix_308	INO	Not Available	64.44%
Matrix_483	ICU4	Not Available	64.40%
Matrix_249	WRKY11	Not Available	64.16%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	63.70%
Matrix_441	ATHB5	Not Available	63.46%
Matrix_500	WRKY43	Not Available	63.38%
Matrix_143	GATA14; GATA6; GATA5	Not Available	63.14%
Matrix_259	AT1G50680; AT1G51120	Not Available	63.11%
Matrix_328	AT1G76580	Not Available	62.87%
Matrix_99	DOF4.7	Not Available	62.64%
Matrix_75	WRKY29	Not Available	62.59%
Matrix_383	CCA1	Not Available	62.57%
Matrix_160	RVE1	Not Available	62.37%
Matrix_461	ATHB12	Not Available	62.05%
Matrix_81	YAB1	Not Available	61.99%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	61.89%
Matrix_354	AHL12	Not Available	61.79%
Matrix_8	KAN1	Not Available	61.75%
Matrix_142	ZFP8	Not Available	61.68%
Matrix_182	ATHB6	Not Available	61.65%
Matrix_62	HAT5	Not Available	61.52%
Matrix_114	EPR1; AT3G10113	Not Available	61.50%
Matrix_313	ATMYB65; MYB33	Not Available	60.96%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	60.88%
Matrix_384	ATWRKY17	Not Available	60.81%
Matrix_427	ZAT14	Not Available	60.70%
Matrix_70	GATA26	Not Available	60.52%
Matrix_434	ARR11	Not Available	60.51%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	60.49%
Matrix_157	LHY; RVE2	Not Available	60.38%
Matrix_97	APRR2	Not Available	60.19%
Matrix_318	ATHB16	Not Available	60.05%
Matrix_491	AT1G68670; AT3G25790	Not Available	59.99%
Matrix_227	AT1G64620	Not Available	59.96%
Matrix_370	WRKY50; WRKY51	Not Available	59.88%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	59.86%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	59.85%
Matrix_46	AT4G21895	Not Available	59.81%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	59.78%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	59.40%
Matrix_447	RVE1	Not Available	59.39%
Matrix_286	GATA7	Not Available	59.25%
Matrix_71	ATHB7	Not Available	59.21%
Matrix_72	CDF2	Not Available	59.21%
Matrix_333	GATA3	Not Available	59.18%
Matrix_380	ATMYR1	Not Available	59.05%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	59.03%
Matrix_52	ZAT18	Not Available	58.77%
Matrix_3	WRKY48	Not Available	58.76%
Matrix_453	EIL3	Not Available	58.58%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	58.48%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	58.35%
Matrix_4	ARR14	Not Available	58.33%
Matrix_152	EIL1; AT5G65100	Not Available	58.17%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	58.09%
Matrix_206	CUC1; ANAC100	Not Available	58.02%
Matrix_151	ASIL1	Not Available	57.92%
Matrix_501	DAG2	Not Available	57.87%
Matrix_416	ASL5	Not Available	57.80%
Matrix_236	CCA1	Not Available	57.72%
Matrix_100	AT1G48610	Not Available	57.71%
Matrix_241	HB-1; AT5G44180	Not Available	57.64%
Matrix_210	ARR1	Not Available	57.49%
Matrix_181	Dof5.7	Not Available	57.48%
Matrix_162	AtPHR1	Not Available	57.48%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	57.32%
Matrix_69	AT2G03500	Not Available	57.26%
Matrix_16	AT3G04450; PHL1	Not Available	57.13%
Matrix_302	HAT1; HAT2	Not Available	57.11%
Matrix_415	WRKY27	Not Available	57.05%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	56.52%
Matrix_489	RAV1	Not Available	56.50%
Matrix_197	NAP	Not Available	56.42%
Matrix_53	MYC3	Not Available	56.34%
Matrix_141	AT3G25990	Not Available	56.30%
Matrix_361	AT1G25550	Not Available	56.27%
Matrix_102	WRKY21	Not Available	56.18%
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	56.08%
Matrix_177	ADOF2	Not Available	55.92%
Matrix_423	AT3G04030	Not Available	55.86%
Matrix_9	AT5G04760	Not Available	55.82%
Matrix_248	ZFP5	Not Available	55.79%
Matrix_494	OBP4	Not Available	55.64%
Matrix_324	AT2G01060	Not Available	55.54%
Matrix_336	AT5G08520	Not Available	55.51%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	55.50%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	55.31%
Matrix_163	AT2G20110	Not Available	55.18%
Matrix_78	AT3G45610	Not Available	54.65%
Matrix_26	ATMYB3; MYB24	Not Available	54.63%
Matrix_404	OBP4	Not Available	54.60%
Matrix_37	GATA27	Not Available	54.59%
Matrix_254	MYB52	Not Available	54.59%
Matrix_418	KNAT6; KNAT2	Not Available	54.47%
Matrix_411	DOF5.6	Not Available	54.39%
Matrix_59	AT4G00238; AT4G00250	Not Available	54.35%
Matrix_226	GATA1	Not Available	54.21%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	54.21%
Matrix_487	AT1G29160	Not Available	54.17%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	54.13%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	54.10%
Matrix_513	SOL1; TSO1; TCX2	Not Available	54.03%
Matrix_322	NST3; ANAC015; BRN2	Not Available	53.90%
Matrix_293	WRKY38	Not Available	53.64%
Matrix_271	AT3G16350	Not Available	53.52%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	53.49%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	53.44%
Matrix_502	AT3G13040	Not Available	53.42%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	53.42%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	53.16%
Matrix_457	TGA2	Not Available	53.05%
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	52.99%
Matrix_112	TBP2; TFIID-1	Not Available	52.98%
Matrix_429	KAN4	Not Available	52.98%
Matrix_255	cdf3	Not Available	52.85%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	52.77%
Matrix_376	WRKY45	Not Available	52.69%
Matrix_38	SPL14	Not Available	52.65%
Matrix_262	ATGRP2B; CSDP2	Not Available	52.61%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	52.57%
Matrix_41	anac058	Not Available	52.57%
Matrix_329	WRKY12	Not Available	52.55%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.32%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	52.11%
Matrix_366	ARR14	Not Available	51.93%
Matrix_87	AT1G19000	Not Available	51.91%
Matrix_471	KAN4	Not Available	51.85%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.83%
Matrix_84	AtGRF6	Not Available	51.75%
Matrix_220	WRKY18	Not Available	51.71%
Matrix_519	ATDOF2.4	Not Available	51.60%
Matrix_463	HAT3.1	Not Available	51.57%
Matrix_410	TOE2	Not Available	51.41%
Matrix_237	MYB55	Not Available	51.34%
Matrix_265	NGA3	Not Available	51.29%
Matrix_193	RAV1	Not Available	51.29%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	51.26%
Matrix_421	GLK1	Not Available	51.16%
Matrix_101	ERF5	Not Available	51.13%
Matrix_430	TOE2	Not Available	51.13%
Matrix_204	WOX13	Not Available	51.11%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	51.11%
Matrix_67	GLK1	Not Available	51.05%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	50.94%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	50.90%
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	50.87%
Matrix_402	TOE1	Not Available	50.83%
Matrix_171	LBD3; LBD4	Not Available	50.78%
Matrix_195	GATA2; GATA4	Not Available	50.76%
Matrix_392	ARR2	Not Available	50.71%
Matrix_85	SPL5	Not Available	50.66%
Matrix_230	ARR11	Not Available	50.53%
Matrix_175	Dof5.7	Not Available	50.52%
Matrix_504	WRKY40	Not Available	50.51%
Matrix_126	RBE	Not Available	50.42%
Matrix_424	MYB59	Not Available	50.20%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.19%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	50.18%