| Matrix_332 | SPT; ALC | Not Available | | 68.51% |
| Matrix_91 | CRF3 | Not Available | | 68.07% |
| Matrix_355 | ERF10; ERF11 | Not Available | | 67.37% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 67.32% |
| Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 66.79% |
| Matrix_261 | ATERF-1 | Not Available | | 66.38% |
| Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 66.18% |
| Matrix_170 | AT5G47660 | Not Available | | 65.69% |
| Matrix_84 | AtGRF6 | Not Available | | 65.06% |
| Matrix_367 | REM1 | Not Available | | 64.62% |
| Matrix_53 | MYC3 | Not Available | | 64.38% |
| Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 64.00% |
| Matrix_120 | BEE2 | Not Available | | 63.84% |
| Matrix_233 | MYC3 | Not Available | | 63.78% |
| Matrix_449 | BIM2 | Not Available | | 63.73% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 63.45% |
| Matrix_330 | MYC2; TT8 | Not Available | | 63.40% |
| Matrix_465 | MYC4 | Not Available | | 63.37% |
| Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 63.18% |
| Matrix_152 | EIL1; AT5G65100 | Not Available | | 63.01% |
| Matrix_150 | UNE10; PIF7 | Not Available | | 62.91% |
| Matrix_389 | ILR3 | Not Available | | 62.83% |
| Matrix_37 | GATA27 | Not Available | | 62.71% |
| Matrix_169 | E2F1 | Not Available | | 62.69% |
| Matrix_323 | BIM3 | Not Available | | 62.64% |
| Matrix_274 | EDF3 | Not Available | | 62.52% |
| Matrix_365 | AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1 | Not Available | | 62.29% |
| Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 62.23% |
| Matrix_218 | TIFY2B; TIFY1 | Not Available | | 61.91% |
| Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | | 61.89% |
| Matrix_60 | AT1G01260; AT5G57150 | Not Available | | 61.79% |
| Matrix_113 | ABI5 | Not Available | | 61.71% |
| Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 61.08% |
| Matrix_320 | MYC4 | Not Available | | 60.48% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 60.23% |
| Matrix_437 | MYC2 | Not Available | | 60.20% |
| Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 60.10% |
| Matrix_409 | DEAR3 | Not Available | | 60.02% |
| Matrix_151 | ASIL1 | Not Available | | 59.77% |
| Matrix_145 | GBF4; AT5G44080 | Not Available | | 59.75% |
| Motif_133 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 59.64% |
| Matrix_119 | RRTF1 | Not Available | | 59.47% |
| Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 59.41% |
| Motif_124 | ABREMOTIFIIIOSRAB16B | Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other | | 59.37% |
| Matrix_476 | bHLH115; bHLH34 | Not Available | | 59.07% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 58.89% |
| Matrix_65 | POC1; PIL1 | Not Available | | 58.76% |
| Matrix_456 | bZIP60 | Not Available | | 58.74% |
| Matrix_134 | ABF1 | Not Available | | 58.61% |
| Matrix_311 | TGA1 | Not Available | | 58.56% |
| Matrix_336 | AT5G08520 | Not Available | | 58.54% |
| Matrix_502 | AT3G13040 | Not Available | | 58.52% |
| Matrix_415 | WRKY27 | Not Available | | 58.51% |
| Matrix_27 | ATAIB; ATNIG1 | Not Available | | 58.36% |
| Matrix_363 | RAP2.3 | Not Available | | 58.13% |
| Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 58.07% |
| Matrix_129 | ABF1 | Not Available | | 58.02% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 57.90% |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 57.90% |
| Matrix_138 | RRTF1 | Not Available | | 57.85% |
| Matrix_166 | TGA4 | Not Available | | 57.50% |
| Matrix_247 | PIF3 | Not Available | | 57.44% |
| Matrix_46 | AT4G21895 | Not Available | | 57.35% |
| Matrix_448 | ATERF6 | Not Available | | 57.30% |
| Matrix_171 | LBD3; LBD4 | Not Available | | 57.29% |
| Matrix_70 | GATA26 | Not Available | | 57.19% |
| Matrix_139 | OBF5 | Not Available | | 57.16% |
| Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 57.06% |
| Matrix_334 | AT3G23230 | Not Available | | 57.02% |
| Matrix_224 | ERF1 | Not Available | | 57.00% |
| Matrix_505 | GATA8 | Not Available | | 56.98% |
| Matrix_197 | NAP | Not Available | | 56.88% |
| Matrix_516 | ANAC038; ANAC079 | Not Available | | 56.85% |
| Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 56.80% |
| Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | | 56.72% |
| Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 56.64% |
| Matrix_425 | TIFY2A | Not Available | | 56.64% |
| Matrix_282 | bZIP60 | Not Available | | 56.64% |
| Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 56.32% |
| Matrix_489 | RAV1 | Not Available | | 56.27% |
| Matrix_506 | DRNL; ATERF-4 | Not Available | | 56.25% |
| Matrix_174 | ZAT2 | Not Available | | 56.22% |
| Matrix_300 | bZIP68; bZIP16 | Not Available | | 56.20% |
| Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | | 56.14% |
| Matrix_142 | ZFP8 | Not Available | | 56.06% |
| Matrix_162 | AtPHR1 | Not Available | | 55.93% |
| Matrix_228 | TGA2 | Not Available | | 55.89% |
| Motif_407 | CE3OSOSEM | CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | | 55.84% |
| Matrix_288 | RAP2.3 | Not Available | | 55.75% |
| Matrix_1 | TOE2 | Not Available | | 55.69% |
| Matrix_69 | AT2G03500 | Not Available | | 55.68% |
| Matrix_422 | TOE1 | Not Available | | 55.64% |
| Matrix_277 | RAP2.6 | Not Available | | 55.63% |
| Matrix_296 | GBF2 | Not Available | | 55.51% |
| Motif_244 | ABRE-like binding site motif | Not Available | | 55.44% |
| Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 55.43% |
| Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 55.40% |
| Matrix_128 | TGA2 | Not Available | | 55.18% |
| Matrix_321 | HRD | Not Available | | 55.09% |
| Matrix_97 | APRR2 | Not Available | | 54.99% |
| Matrix_64 | PIF5 | Not Available | | 54.96% |
| Matrix_308 | INO | Not Available | | 54.80% |
| Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | | 54.80% |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 54.77% |
| Matrix_388 | SNZ; SMZ; TOE2 | Not Available | | 54.61% |
| Matrix_406 | ATERF-7 | Not Available | | 54.53% |
| Matrix_373 | E2FE | Not Available | | 54.47% |
| Matrix_433 | ATERF1 | Not Available | | 54.44% |
| Matrix_78 | AT3G45610 | Not Available | | 54.31% |
| Matrix_111 | ABF3 | Not Available | | 54.28% |
| Matrix_226 | GATA1 | Not Available | | 54.26% |
| Matrix_16 | AT3G04450; PHL1 | Not Available | | 54.24% |
| Matrix_101 | ERF5 | Not Available | | 54.13% |
| Matrix_87 | AT1G19000 | Not Available | | 54.04% |
| Matrix_90 | BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915 | Not Available | | 53.95% |
| Matrix_182 | ATHB6 | Not Available | | 53.94% |
| Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 53.88% |
| Motif_177 | -300MOTIFZMZEIN | Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind | | 53.81% |
| Matrix_157 | LHY; RVE2 | Not Available | | 53.80% |
| Matrix_26 | ATMYB3; MYB24 | Not Available | | 53.59% |
| Matrix_512 | HAT3 | Not Available | | 53.56% |
| Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 53.47% |
| Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | | 53.36% |
| Matrix_344 | ATERF15; AT4G18450 | Not Available | | 53.32% |
| Matrix_116 | ANAC55 | Not Available | | 53.28% |
| Matrix_329 | WRKY12 | Not Available | | 53.17% |
| Matrix_341 | HMGA | Not Available | | 53.06% |
| Matrix_432 | AT1G77920 | Not Available | | 52.91% |
| Matrix_14 | ZCW32; AT5G62610 | Not Available | | 52.84% |
| Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 52.82% |
| Matrix_230 | ARR11 | Not Available | | 52.82% |
| Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | | 52.80% |
| Matrix_462 | ATERF-8 | Not Available | | 52.75% |
| Matrix_511 | AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180 | Not Available | | 52.66% |
| Matrix_426 | CRF1; CRF2 | Not Available | | 52.66% |
| Matrix_45 | DRN | Not Available | | 52.61% |
| Matrix_361 | AT1G25550 | Not Available | | 52.55% |
| Matrix_241 | HB-1; AT5G44180 | Not Available | | 52.55% |
| Motif_312 | OCTAMERMOTIFTAH3H4 | Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes | | 52.45% |
| Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 52.41% |
| Matrix_380 | ATMYR1 | Not Available | | 52.40% |
| Matrix_12 | EIN3; EIL2 | Not Available | | 52.39% |
| Matrix_141 | AT3G25990 | Not Available | | 52.25% |
| Matrix_328 | AT1G76580 | Not Available | | 52.23% |
| Matrix_324 | AT2G01060 | Not Available | | 52.16% |
| Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 52.10% |
| Matrix_293 | WRKY38 | Not Available | | 52.05% |
| Matrix_35 | YAB5; YAB3 | Not Available | | 52.01% |
| Matrix_271 | AT3G16350 | Not Available | | 51.91% |
| Matrix_420 | ANAC58 | Not Available | | 51.89% |
| Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | | 51.80% |
| Matrix_500 | WRKY43 | Not Available | | 51.80% |
| Motif_308 | SP8BFIBSP8AIB | One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 51.71% |
| Matrix_504 | WRKY40 | Not Available | | 51.70% |
| Matrix_122 | ABF1; AREB2 | Not Available | | 51.67% |
| Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | | 51.67% |
| Motif_207 | MAMMALENHAN | Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene | | 51.66% |
| Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | | 51.64% |
| Matrix_350 | ARR14 | Not Available | | 51.63% |
| Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 51.62% |
| Matrix_286 | GATA7 | Not Available | | 51.56% |
| Matrix_99 | DOF4.7 | Not Available | | 51.50% |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | | 51.47% |
| Matrix_273 | ANAC55 | Not Available | | 51.41% |
| Matrix_421 | GLK1 | Not Available | | 51.41% |
| Matrix_265 | NGA3 | Not Available | | 51.28% |
| Matrix_193 | RAV1 | Not Available | | 51.28% |
| Matrix_195 | GATA2; GATA4 | Not Available | | 51.22% |
| Matrix_333 | GATA3 | Not Available | | 51.18% |
| Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 51.09% |
| Matrix_76 | GATA10 | Not Available | | 50.97% |
| Matrix_484 | ATERF13 | Not Available | | 50.91% |
| Matrix_450 | SPL7 | Not Available | | 50.89% |
| Matrix_110 | ATABI4; AT3G57600 | Not Available | | 50.82% |
| Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | | 50.79% |
| Matrix_23 | ANAC46 | Not Available | | 50.75% |
| Matrix_392 | ARR2 | Not Available | | 50.72% |
| Matrix_10 | STY1 | Not Available | | 50.70% |
| Matrix_287 | ERF2 | Not Available | | 50.66% |
| Matrix_436 | AT3G49930; AZF1 | Not Available | | 50.63% |
| Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 50.55% |
| Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 50.55% |
| Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 50.44% |
| Matrix_397 | GT2L | Not Available | | 50.40% |
| Matrix_522 | GATA11; GATA13 | Not Available | | 50.40% |
| Matrix_210 | ARR1 | Not Available | | 50.32% |
| Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 50.31% |
| Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 50.30% |
| Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 50.26% |
| Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 50.18% |
| Matrix_492 | ETT | Not Available | | 50.17% |
| Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 50.16% |
| Matrix_248 | ZFP5 | Not Available | | 50.14% |
| Matrix_343 | AT2G33710 | Not Available | | 50.10% |
| Matrix_239 | AT5G04390 | Not Available | | 50.08% |
| Matrix_376 | WRKY45 | Not Available | | 50.08% |
Expansion plot
Gene family finder
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Skyline plot
Synteny plot
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Functional clusters
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