PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_240
Name: AT4G29000
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_382	AT3G04850	Not Available	80.04%
Matrix_513	SOL1; TSO1; TCX2	Not Available	73.37%
Matrix_163	AT2G20110	Not Available	69.83%
Matrix_54	AHL20	Not Available	68.37%
Matrix_32	AHL25	Not Available	67.73%
Matrix_444	AT1G19485; AT4G17950	Not Available	66.25%
Matrix_168	AHL25	Not Available	65.27%
Matrix_329	WRKY12	Not Available	65.12%
Matrix_293	WRKY38	Not Available	64.67%
Matrix_431	ATHB21; HB-3	Not Available	63.96%
Matrix_384	ATWRKY17	Not Available	63.65%
Matrix_17	WRKY22	Not Available	63.60%
Matrix_376	WRKY45	Not Available	63.28%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	63.24%
Matrix_75	WRKY29	Not Available	62.58%
Matrix_125	AHL12	Not Available	62.05%
Matrix_220	WRKY18	Not Available	61.51%
Matrix_521	AHL20	Not Available	61.29%
Matrix_53	MYC3	Not Available	61.21%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	60.96%
Matrix_102	WRKY21	Not Available	60.93%
Matrix_370	WRKY50; WRKY51	Not Available	60.69%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	60.43%
Matrix_241	HB-1; AT5G44180	Not Available	60.43%
Matrix_341	HMGA	Not Available	60.26%
Matrix_249	WRKY11	Not Available	60.12%
Matrix_500	WRKY43	Not Available	59.87%
Matrix_3	WRKY48	Not Available	59.72%
Matrix_12	EIN3; EIL2	Not Available	59.66%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	59.46%
Motif_667	TATABOXOSPAL	Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter	59.22%
Matrix_151	ASIL1	Not Available	58.89%
Matrix_489	RAV1	Not Available	58.72%
Matrix_142	ZFP8	Not Available	58.70%
Matrix_185	AHL25	Not Available	58.63%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	58.61%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	58.47%
Matrix_427	ZAT14	Not Available	58.34%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	58.22%
Matrix_197	NAP	Not Available	58.17%
Matrix_424	MYB59	Not Available	57.94%
Matrix_415	WRKY27	Not Available	57.94%
Matrix_70	GATA26	Not Available	57.69%
Matrix_259	AT1G50680; AT1G51120	Not Available	57.67%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	57.53%
Matrix_143	GATA14; GATA6; GATA5	Not Available	57.53%
Matrix_175	Dof5.7	Not Available	57.46%
Matrix_212	ATHB-12	Not Available	57.10%
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	57.03%
Matrix_88	AHL12	Not Available	56.85%
Motif_348	WBBOXPCWRKY1	WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis	56.44%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	56.42%
Motif_587	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	56.26%
Matrix_328	AT1G76580	Not Available	55.97%
Matrix_308	INO	Not Available	55.81%
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	55.76%
Matrix_59	AT4G00238; AT4G00250	Not Available	55.74%
Matrix_470	WRKY18	Not Available	55.72%
Matrix_335	HSFB2A	Not Available	55.52%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	55.50%
Matrix_84	AtGRF6	Not Available	55.43%
Matrix_340	HSFC1	Not Available	55.41%
Matrix_99	DOF4.7	Not Available	55.22%
Matrix_391	AHL20	Not Available	55.18%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	55.12%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	54.87%
Matrix_171	LBD3; LBD4	Not Available	54.76%
Matrix_416	ASL5	Not Available	54.75%
Matrix_390	GT-1	Not Available	54.72%
Motif_376	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	54.66%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	54.61%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	54.55%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	54.46%
Matrix_333	GATA3	Not Available	54.44%
Matrix_307	RGL2; RGL3	Not Available	54.41%
Matrix_248	ZFP5	Not Available	54.30%
Matrix_188	SPL4	Not Available	54.30%
Matrix_93	YAB5	Not Available	54.14%
Motif_178	MRNA3ENDTAH3	Cis element in 3' end region of wheat histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeast	54.10%
Matrix_322	NST3; ANAC015; BRN2	Not Available	54.08%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	54.01%
Matrix_225	MYB52	Not Available	53.82%
Matrix_51	LFY	Not Available	53.78%
Matrix_253	ETT	Not Available	53.65%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	53.61%
Matrix_273	ANAC55	Not Available	53.54%
Matrix_1	TOE2	Not Available	53.53%
Matrix_453	EIL3	Not Available	53.52%
Matrix_37	GATA27	Not Available	53.52%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	53.43%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	53.43%
Matrix_221	SPL7	Not Available	53.41%
Matrix_52	ZAT18	Not Available	53.37%
Matrix_420	ANAC58	Not Available	53.28%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	53.13%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	53.12%
Matrix_422	TOE1	Not Available	53.10%
Matrix_71	ATHB7	Not Available	53.06%
Matrix_380	ATMYR1	Not Available	53.01%
Matrix_495	HD-GL2-1; ANL2	Not Available	53.00%
Matrix_100	AT1G48610	Not Available	52.97%
Matrix_81	YAB1	Not Available	52.97%
Matrix_523	FUSCA3	Not Available	52.71%
Matrix_411	DOF5.6	Not Available	52.53%
Motif_634	ANAERO4CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)	52.44%
Matrix_205	AGL15	Not Available	52.43%
Matrix_181	Dof5.7	Not Available	52.32%
Matrix_38	SPL14	Not Available	52.21%
Matrix_9	AT5G04760	Not Available	52.18%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.13%
Matrix_423	AT3G04030	Not Available	52.02%
Matrix_483	ICU4	Not Available	51.98%
Matrix_177	ADOF2	Not Available	51.95%
Matrix_114	EPR1; AT3G10113	Not Available	51.90%
Matrix_337	MYB46	Not Available	51.85%
Matrix_206	CUC1; ANAC100	Not Available	51.82%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	51.81%
Motif_27	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	51.81%
Matrix_274	EDF3	Not Available	51.79%
Matrix_504	WRKY40	Not Available	51.69%
Matrix_265	NGA3	Not Available	51.61%
Matrix_193	RAV1	Not Available	51.61%
Matrix_87	AT1G19000	Not Available	51.48%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	51.43%
Matrix_354	AHL12	Not Available	51.43%
Matrix_20	ANAC030; NST1; NAC066	Not Available	51.38%
Matrix_418	KNAT6; KNAT2	Not Available	51.33%
Matrix_461	ATHB12	Not Available	51.30%
Matrix_425	TIFY2A	Not Available	51.29%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	51.28%
Matrix_318	ATHB16	Not Available	51.27%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	51.09%
Matrix_397	GT2L	Not Available	51.01%
Matrix_62	HAT5	Not Available	50.95%
Matrix_374	AT5G07580; AT5G61590	Not Available	50.93%
Matrix_469	NAC041; NAC083	Not Available	50.85%
Matrix_243	RAP2.12; RAP2.2	Not Available	50.79%
Matrix_355	ERF10; ERF11	Not Available	50.76%
Matrix_148	WRKY60	Not Available	50.66%
Matrix_442	AT5G62260	Not Available	50.64%
Matrix_29	AP1	Not Available	50.62%
Matrix_78	AT3G45610	Not Available	50.59%
Matrix_389	ILR3	Not Available	50.52%
Matrix_182	ATHB6	Not Available	50.47%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	50.47%
Matrix_285	DDF1	Not Available	50.43%
Matrix_311	TGA1	Not Available	50.43%
Matrix_116	ANAC55	Not Available	50.37%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	50.37%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.34%
Matrix_491	AT1G68670; AT3G25790	Not Available	50.22%
Matrix_302	HAT1; HAT2	Not Available	50.15%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	50.10%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	50.10%