PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_232
Name: TCP23
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_297	TCP15	Not Available	94.23%
Matrix_216	TCP16	Not Available	79.48%
Matrix_507	TCP3	Not Available	77.60%
Matrix_42	AT2G45680	Not Available	71.87%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	71.14%
Matrix_294	MEE35	Not Available	69.69%
Matrix_82	TCP17	Not Available	67.87%
Matrix_196	TCP20; AT5G41030	Not Available	67.55%
Matrix_130	TCP16	Not Available	67.39%
Matrix_348	AT5G51910	Not Available	66.78%
Matrix_281	TCP13	Not Available	66.15%
Matrix_94	TCP5	Not Available	65.86%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	63.62%
Matrix_144	AT5G08330; AT5G23280	Not Available	63.51%
Matrix_405	DREB2C	Not Available	62.58%
Matrix_146	ORA47	Not Available	61.90%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	61.61%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	61.28%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	61.27%
Matrix_362	DEAR3	Not Available	61.18%
Matrix_343	AT2G33710	Not Available	61.16%
Matrix_190	ATERF1	Not Available	61.07%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	60.45%
Matrix_40	TCP2	Not Available	59.89%
Matrix_378	ATERF1	Not Available	59.78%
Matrix_473	RRTF1	Not Available	59.78%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	58.47%
Matrix_234	RAP2.3	Not Available	58.47%
Matrix_252	RAP2.6	Not Available	58.06%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	57.99%
Matrix_272	DEAR4	Not Available	57.86%
Motif_264	GCBP2ZMGAPC4	Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285	57.60%
Matrix_321	HRD	Not Available	57.27%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	57.03%
Matrix_287	ERF2	Not Available	56.89%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	56.81%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	56.55%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	56.54%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	56.44%
Matrix_101	ERF5	Not Available	56.28%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	55.90%
Matrix_102	WRKY21	Not Available	55.83%
Matrix_261	ATERF-1	Not Available	55.66%
Matrix_290	AP2	Not Available	55.34%
Matrix_91	CRF3	Not Available	54.81%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	54.56%
Matrix_220	WRKY18	Not Available	54.18%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	54.17%
Matrix_3	WRKY48	Not Available	54.11%
Matrix_484	ATERF13	Not Available	54.01%
Matrix_169	E2F1	Not Available	53.95%
Matrix_373	E2FE	Not Available	53.93%
Matrix_370	WRKY50; WRKY51	Not Available	53.65%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	53.28%
Matrix_384	ATWRKY17	Not Available	53.22%
Matrix_61	ATCBF3	Not Available	53.18%
Matrix_482	AT2G25650; AT4G00270	Not Available	53.17%
Matrix_478	AT1G01250	Not Available	53.02%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	52.93%
Matrix_363	RAP2.3	Not Available	52.74%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	52.61%
Matrix_288	RAP2.3	Not Available	52.53%
Matrix_470	WRKY18	Not Available	52.47%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	52.38%
Motif_636	AMMORESVDCRNIA1	Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation	52.16%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	52.08%
Matrix_493	AT1G22985; AT1G71130	Not Available	51.98%
Matrix_295	ERF1	Not Available	51.75%
Matrix_517	ERF12	Not Available	51.60%
Matrix_277	RAP2.6	Not Available	51.57%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.37%
Matrix_147	ERF3; AT1G80580	Not Available	51.28%
Matrix_75	WRKY29	Not Available	51.23%
Matrix_5	AT5G51190; ERF104	Not Available	51.23%
Motif_31	UPRE1AT	ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	51.14%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	51.09%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	50.97%
Motif_163	BOXCPSAS1	Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1	50.94%
Matrix_426	CRF1; CRF2	Not Available	50.90%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	50.90%
Matrix_17	WRKY22	Not Available	50.75%
Matrix_86	CRF5; CRF6; CRF4	Not Available	50.74%
Matrix_197	NAP	Not Available	50.65%
Matrix_374	AT5G07580; AT5G61590	Not Available	50.43%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	50.36%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	50.32%
Motif_109	PREMOTIFNPCABE	Motif sequence repeated many times in two positive regulatory elements, PRE1 (-1554 to -1182) and PRE2 (-747 to -516) found far upstream in the tobacco CAB gene (cab-E) promoter; Confer maximum levels of photoregulated expression	50.30%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	50.27%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	50.22%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	50.18%