PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_187
Name: CDC5
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_349	CDC5	Not Available	100.00%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	70.01%
Matrix_389	ILR3	Not Available	67.20%
Matrix_329	WRKY12	Not Available	67.14%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	66.55%
Matrix_330	MYC2; TT8	Not Available	66.21%
Matrix_323	BIM3	Not Available	65.36%
Matrix_449	BIM2	Not Available	65.35%
Matrix_465	MYC4	Not Available	65.31%
Matrix_293	WRKY38	Not Available	65.29%
Matrix_146	ORA47	Not Available	65.10%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	65.09%
Matrix_53	MYC3	Not Available	64.52%
Matrix_343	AT2G33710	Not Available	63.98%
Matrix_120	BEE2	Not Available	63.58%
Matrix_272	DEAR4	Not Available	63.55%
Matrix_467	RAV1	Not Available	62.69%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	62.69%
Matrix_477	RAV1	Not Available	62.69%
Matrix_376	WRKY45	Not Available	62.49%
Matrix_457	TGA2	Not Available	62.35%
Matrix_287	ERF2	Not Available	62.28%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	61.92%
Matrix_101	ERF5	Not Available	61.85%
Matrix_234	RAP2.3	Not Available	61.74%
Matrix_175	Dof5.7	Not Available	61.70%
Matrix_451	STY1	Not Available	61.61%
Matrix_190	ATERF1	Not Available	61.54%
Matrix_397	GT2L	Not Available	61.47%
Matrix_369	AT2G18300	Not Available	61.32%
Matrix_252	RAP2.6	Not Available	61.23%
Matrix_378	ATERF1	Not Available	61.13%
Matrix_174	ZAT2	Not Available	61.08%
Matrix_438	AtbZIP63	Not Available	60.81%
Matrix_473	RRTF1	Not Available	60.75%
Matrix_409	DEAR3	Not Available	60.65%
Matrix_3	WRKY48	Not Available	60.64%
Matrix_355	ERF10; ERF11	Not Available	60.46%
Matrix_493	AT1G22985; AT1G71130	Not Available	60.36%
Matrix_75	WRKY29	Not Available	60.25%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	60.21%
Matrix_373	E2FE	Not Available	59.77%
Matrix_102	WRKY21	Not Available	59.67%
Matrix_193	RAV1	Not Available	59.47%
Matrix_265	NGA3	Not Available	59.47%
Matrix_362	DEAR3	Not Available	59.35%
Matrix_50	ATERF14; AT5G43410	Not Available	59.13%
Matrix_17	WRKY22	Not Available	59.08%
Matrix_384	ATWRKY17	Not Available	59.04%
Matrix_260	CAMTA3	Not Available	58.99%
Matrix_367	REM1	Not Available	58.93%
Matrix_344	ATERF15; AT4G18450	Not Available	58.91%
Matrix_91	CRF3	Not Available	58.75%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	58.73%
Matrix_415	WRKY27	Not Available	58.69%
Matrix_370	WRKY50; WRKY51	Not Available	58.68%
Matrix_261	ATERF-1	Not Available	58.63%
Matrix_171	LBD3; LBD4	Not Available	58.58%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	58.41%
Matrix_321	HRD	Not Available	58.10%
Matrix_399	TGA1	Not Available	58.00%
Matrix_129	ABF1	Not Available	57.84%
Matrix_431	ATHB21; HB-3	Not Available	57.64%
Matrix_220	WRKY18	Not Available	57.63%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	57.52%
Matrix_247	PIF3	Not Available	57.43%
Matrix_5	AT5G51190; ERF104	Not Available	57.37%
Matrix_446	LBD16	Not Available	57.35%
Matrix_57	WIN1; SHN3; SHN2	Not Available	57.35%
Matrix_197	NAP	Not Available	57.31%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	57.27%
Matrix_61	ATCBF3	Not Available	57.21%
Matrix_339	bHLH104	Not Available	56.91%
Matrix_14	ZCW32; AT5G62610	Not Available	56.90%
Matrix_328	AT1G76580	Not Available	56.75%
Matrix_59	AT4G00238; AT4G00250	Not Available	56.71%
Matrix_489	RAV1	Not Available	56.55%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	56.47%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	56.38%
Matrix_385	DEAR4	Not Available	56.31%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	56.27%
Motif_638	ABRE binding site motif	Not Available	56.26%
Matrix_180	SPL1	Not Available	56.19%
Matrix_92	AT1G33760	Not Available	56.19%
Matrix_201	AT1G74840	Not Available	56.08%
Matrix_332	SPT; ALC	Not Available	56.02%
Matrix_70	GATA26	Not Available	55.99%
Matrix_406	ATERF-7	Not Available	55.96%
Matrix_472	ZN_C2_H2	Not Available	55.95%
Matrix_506	DRNL; ATERF-4	Not Available	55.93%
Matrix_462	ATERF-8	Not Available	55.71%
Matrix_394	DREB_U	Not Available	55.68%
Motif_124	ABREMOTIFIIIOSRAB16B	Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	55.68%
Matrix_113	ABI5	Not Available	55.67%
Matrix_423	AT3G04030	Not Available	55.62%
Matrix_311	TGA1	Not Available	55.55%
Matrix_478	AT1G01250	Not Available	55.36%
Matrix_86	CRF5; CRF6; CRF4	Not Available	55.33%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	55.07%
Matrix_151	ASIL1	Not Available	55.00%
Matrix_288	RAP2.3	Not Available	54.94%
Matrix_128	TGA2	Not Available	54.92%
Matrix_374	AT5G07580; AT5G61590	Not Available	54.87%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	54.86%
Motif_4	NAP	An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves	54.80%
Matrix_226	GATA1	Not Available	54.74%
Matrix_138	RRTF1	Not Available	54.62%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.58%
Matrix_470	WRKY18	Not Available	54.58%
Matrix_122	ABF1; AREB2	Not Available	54.45%
Matrix_10	STY1	Not Available	54.39%
Matrix_432	AT1G77920	Not Available	54.37%
Matrix_416	ASL5	Not Available	54.33%
Matrix_480	BES1	Not Available	54.33%
Matrix_363	RAP2.3	Not Available	54.31%
Matrix_26	ATMYB3; MYB24	Not Available	54.29%
Matrix_426	CRF1; CRF2	Not Available	54.22%
Matrix_176	MYB98	Not Available	54.16%
Matrix_484	ATERF13	Not Available	54.13%
Motif_244	ABRE-like binding site motif	Not Available	54.07%
Matrix_334	AT3G23230	Not Available	54.06%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	54.04%
Matrix_224	ERF1	Not Available	54.02%
Matrix_166	TGA4	Not Available	53.88%
Matrix_333	GATA3	Not Available	53.79%
Matrix_119	RRTF1	Not Available	53.78%
Motif_407	CE3OSOSEM	CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	53.78%
Matrix_277	RAP2.6	Not Available	53.77%
Matrix_45	DRN	Not Available	53.72%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	53.71%
Matrix_79	FUS3	Not Available	53.66%
Matrix_38	SPL14	Not Available	53.65%
Matrix_139	OBF5	Not Available	53.64%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	53.56%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	53.53%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	53.34%
Matrix_188	SPL4	Not Available	53.26%
Matrix_244	DREB2C	Not Available	53.25%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	53.24%
Matrix_420	ANAC58	Not Available	53.21%
Matrix_243	RAP2.12; RAP2.2	Not Available	53.17%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.16%
Matrix_422	TOE1	Not Available	53.15%
Matrix_209	RAP2.6	Not Available	53.14%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.11%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	53.10%
Matrix_169	E2F1	Not Available	53.02%
Matrix_380	ATMYR1	Not Available	52.91%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.86%
Motif_641	LRENPCABE	LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241	52.83%
Matrix_83	PRR5	Not Available	52.76%
Matrix_65	POC1; PIL1	Not Available	52.72%
Matrix_448	ATERF6	Not Available	52.69%
Matrix_37	GATA27	Not Available	52.67%
Matrix_240	AT4G29000	Not Available	52.62%
Matrix_85	SPL5	Not Available	52.60%
Matrix_307	RGL2; RGL3	Not Available	52.59%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	52.55%
Matrix_418	KNAT6; KNAT2	Not Available	52.53%
Matrix_12	EIN3; EIL2	Not Available	52.48%
Matrix_195	GATA2; GATA4	Not Available	52.45%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.40%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	52.37%
Matrix_300	bZIP68; bZIP16	Not Available	52.36%
Matrix_322	NST3; ANAC015; BRN2	Not Available	52.35%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	52.34%
Matrix_352	LEC2	Not Available	52.33%
Matrix_405	DREB2C	Not Available	52.32%
Matrix_504	WRKY40	Not Available	52.29%
Matrix_433	ATERF1	Not Available	52.28%
Matrix_285	DDF1	Not Available	52.27%
Matrix_147	ERF3; AT1G80580	Not Available	52.25%
Matrix_1	TOE2	Not Available	52.22%
Matrix_296	GBF2	Not Available	52.18%
Matrix_507	TCP3	Not Available	52.17%
Matrix_259	AT1G50680; AT1G51120	Not Available	52.12%
Matrix_27	ATAIB; ATNIG1	Not Available	52.10%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.88%
Matrix_475	AT5G64220	Not Available	51.85%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	51.82%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	51.79%
Matrix_520	ARR14	Not Available	51.76%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	51.70%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	51.69%
Matrix_286	GATA7	Not Available	51.59%
Matrix_23	ANAC46	Not Available	51.45%
Matrix_440	LFY	Not Available	51.38%
Matrix_142	ZFP8	Not Available	51.36%
Matrix_135	ABI3	Not Available	51.31%
Matrix_360	ORA59	Not Available	51.31%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	51.23%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	51.14%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	51.13%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.09%
Matrix_500	WRKY43	Not Available	51.01%
Matrix_297	TCP15	Not Available	51.01%
Matrix_196	TCP20; AT5G41030	Not Available	50.97%
Motif_531	AP2SV40	AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	50.94%
Matrix_476	bHLH115; bHLH34	Not Available	50.92%
Matrix_221	SPL7	Not Available	50.91%
Matrix_237	MYB55	Not Available	50.90%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	50.79%
Motif_312	OCTAMERMOTIFTAH3H4	Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes	50.78%
Matrix_148	WRKY60	Not Available	50.71%
Matrix_141	AT3G25990	Not Available	50.66%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	50.59%
Matrix_264	ATAREB1	Not Available	50.57%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	50.55%
Matrix_452	MYB46	Not Available	50.54%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.52%
Matrix_253	ETT	Not Available	50.50%
Matrix_295	ERF1	Not Available	50.47%
Matrix_421	GLK1	Not Available	50.46%
Matrix_162	AtPHR1	Not Available	50.37%
Matrix_241	HB-1; AT5G44180	Not Available	50.36%
Matrix_502	AT3G13040	Not Available	50.28%
Matrix_233	MYC3	Not Available	50.28%
Matrix_109	GBF3	Not Available	50.26%
Matrix_249	WRKY11	Not Available	50.23%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	50.15%
Matrix_505	GATA8	Not Available	50.14%
Motif_58	LREBOXIPCCHS1	BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat	50.12%
Matrix_456	bZIP60	Not Available	50.08%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	50.07%
Matrix_203	GATA9; GATA12	Not Available	50.07%
Matrix_84	AtGRF6	Not Available	50.05%
Motif_558	BOXIIPCCHS	Core of Box II/G box found in the parsley chs genes; Essential for light regulation	50.04%
Matrix_437	MYC2	Not Available	50.02%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	50.00%
Matrix_230	ARR11	Not Available	50.00%