| Matrix_436 | AT3G49930; AZF1 | Not Available | | 94.12% |
| Matrix_198 | STZ; C2H2; AZF3 | Not Available | | 93.94% |
| Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 91.92% |
| Matrix_239 | AT5G04390 | Not Available | | 89.89% |
| Matrix_379 | RHL41 | Not Available | | 89.75% |
| Matrix_126 | RBE | Not Available | | 88.12% |
| Matrix_100 | AT1G48610 | Not Available | | 71.66% |
| Matrix_35 | YAB5; YAB3 | Not Available | | 69.22% |
| Matrix_425 | TIFY2A | Not Available | | 66.95% |
| Matrix_519 | ATDOF2.4 | Not Available | | 65.02% |
| Matrix_96 | TMO6 | Not Available | | 64.63% |
| Matrix_112 | TBP2; TFIID-1 | Not Available | | 62.49% |
| Matrix_78 | AT3G45610 | Not Available | | 59.69% |
| Matrix_27 | ATAIB; ATNIG1 | Not Available | | 59.64% |
| Matrix_177 | ADOF2 | Not Available | | 57.89% |
| Matrix_14 | ZCW32; AT5G62610 | Not Available | | 57.21% |
| Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 56.64% |
| Matrix_84 | AtGRF6 | Not Available | | 56.11% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 55.36% |
| Matrix_296 | GBF2 | Not Available | | 55.01% |
| Matrix_241 | HB-1; AT5G44180 | Not Available | | 54.83% |
| Matrix_411 | DOF5.6 | Not Available | | 54.16% |
| Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | | 54.13% |
| Matrix_248 | ZFP5 | Not Available | | 53.73% |
| Matrix_512 | HAT3 | Not Available | | 53.34% |
| Matrix_300 | bZIP68; bZIP16 | Not Available | | 53.28% |
| Matrix_7 | PIF4 | Not Available | | 53.08% |
| Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 52.63% |
| Matrix_218 | TIFY2B; TIFY1 | Not Available | | 52.44% |
| Matrix_65 | POC1; PIL1 | Not Available | | 51.94% |
| Motif_447 | AtMYC2 BS in RD22; PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 51.82% |
| Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | | 51.31% |
| Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | | 51.30% |
| Matrix_334 | AT3G23230 | Not Available | | 51.16% |
| Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | | 51.08% |
| Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | | 51.05% |
| Motif_606 | NAPINMOTIFBN | Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds | | 50.92% |
| Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | | 50.80% |
| Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | | 50.47% |
| Matrix_137 | SPL1; SPL12 | Not Available | | 50.43% |
| Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | | 50.37% |
| Motif_688 | AMMORESIVDCRNIA1 | Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression | | 50.33% |
| Motif_323 | MYB1LEPR | Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG)) | | 50.14% |
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