PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_137
Name: SPL1; SPL12
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_85	SPL5	Not Available	84.60%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	82.50%
Matrix_188	SPL4	Not Available	78.58%
Matrix_221	SPL7	Not Available	78.33%
Matrix_307	RGL2; RGL3	Not Available	75.70%
Matrix_243	RAP2.12; RAP2.2	Not Available	65.89%
Matrix_78	AT3G45610	Not Available	65.48%
Matrix_177	ADOF2	Not Available	63.50%
Matrix_460	NAM; anac025; ATNAC2	Not Available	63.37%
Matrix_494	OBP4	Not Available	63.29%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	63.25%
Matrix_165	KNAT1	Not Available	63.13%
Matrix_450	SPL7	Not Available	62.98%
Matrix_411	DOF5.6	Not Available	61.94%
Matrix_84	AtGRF6	Not Available	61.74%
Matrix_180	SPL1	Not Available	61.70%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	61.22%
Matrix_274	EDF3	Not Available	61.09%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	60.82%
Matrix_218	TIFY2B; TIFY1	Not Available	60.57%
Matrix_379	RHL41	Not Available	59.74%
Matrix_14	ZCW32; AT5G62610	Not Available	59.35%
Matrix_503	AT2G37430; AT3G53600	Not Available	59.18%
Matrix_126	RBE	Not Available	58.70%
Matrix_239	AT5G04390	Not Available	58.58%
Matrix_334	AT3G23230	Not Available	58.53%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	58.48%
Matrix_281	TCP13	Not Available	58.44%
Matrix_198	STZ; C2H2; AZF3	Not Available	58.39%
Matrix_504	WRKY40	Not Available	58.26%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	58.04%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	57.91%
Matrix_31	SPL1	Not Available	57.86%
Matrix_519	ATDOF2.4	Not Available	57.35%
Matrix_152	EIL1; AT5G65100	Not Available	57.27%
Matrix_80	BIM1	Not Available	57.18%
Matrix_35	YAB5; YAB3	Not Available	57.06%
Matrix_328	AT1G76580	Not Available	56.97%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	56.62%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	56.62%
Matrix_436	AT3G49930; AZF1	Not Available	56.31%
Matrix_254	MYB52	Not Available	56.26%
Matrix_100	AT1G48610	Not Available	55.94%
Motif_329	AMMORESIIUDCRNIA1	Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation	55.85%
Matrix_182	ATHB6	Not Available	55.34%
Matrix_296	GBF2	Not Available	55.29%
Motif_576	TGACGTVMAMY	TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds	55.26%
Matrix_300	bZIP68; bZIP16	Not Available	55.13%
Matrix_469	NAC041; NAC083	Not Available	54.97%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	54.83%
Matrix_7	PIF4	Not Available	54.78%
Matrix_418	KNAT6; KNAT2	Not Available	54.69%
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	54.64%
Matrix_112	TBP2; TFIID-1	Not Available	54.58%
Matrix_374	AT5G07580; AT5G61590	Not Available	54.54%
Motif_86	ACGTABOX	A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression	54.52%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	54.47%
Matrix_520	ARR14	Not Available	54.27%
Matrix_487	AT1G29160	Not Available	54.15%
Matrix_512	HAT3	Not Available	54.12%
Matrix_248	ZFP5	Not Available	54.01%
Matrix_415	WRKY27	Not Available	53.75%
Matrix_37	GATA27	Not Available	53.68%
Matrix_425	TIFY2A	Not Available	53.64%
Motif_26	GRF7	Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A	53.37%
Matrix_323	BIM3	Not Available	53.33%
Motif_525	CRTDREHVCBF2	Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature	53.24%
Matrix_38	SPL14	Not Available	53.18%
Matrix_99	DOF4.7	Not Available	53.12%
Motif_139	RHERPATEXPA7	Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns	53.01%
Matrix_94	TCP5	Not Available	52.99%
Matrix_41	anac058	Not Available	52.92%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	52.87%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	52.70%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	52.56%
Matrix_505	GATA8	Not Available	52.54%
Matrix_120	BEE2	Not Available	52.53%
Motif_33	ACGTCBOX	C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site	52.44%
Matrix_319	TEM1	Not Available	52.35%
Matrix_236	CCA1	Not Available	52.28%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	52.02%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	51.93%
Matrix_475	AT5G64220	Not Available	51.89%
Matrix_294	MEE35	Not Available	51.79%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	51.65%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	51.60%
Motif_249	DPBF1&2 binding site motif	A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system	51.55%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	51.50%
Matrix_233	MYC3	Not Available	51.39%
Matrix_344	ATERF15; AT4G18450	Not Available	51.28%
Matrix_315	MYB111	Not Available	51.27%
Matrix_96	TMO6	Not Available	51.26%
Matrix_271	AT3G16350	Not Available	51.11%
Matrix_197	NAP	Not Available	51.09%
Matrix_206	CUC1; ANAC100	Not Available	51.04%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	51.02%
Motif_339	ABRE-like binding site motif	Molecular responses to dehydration and low temperature	50.99%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	50.90%
Matrix_273	ANAC55	Not Available	50.85%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	50.85%
Matrix_106	AT5G47390	Not Available	50.79%
Matrix_241	HB-1; AT5G44180	Not Available	50.76%
Motif_212	GARE2OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	50.68%
Matrix_82	TCP17	Not Available	50.67%
Motif_182	MYB2CONSENSUSAT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22	50.66%
Matrix_398	TBP2; ATTRB2	Not Available	50.55%
Motif_443	KN1; BP	The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity	50.51%
Matrix_331	GBF1	Not Available	50.49%
Motif_502	MYB98	The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98	50.47%
Matrix_159	TEM2	Not Available	50.44%
Matrix_79	FUS3	Not Available	50.33%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	50.27%
Matrix_129	ABF1	Not Available	50.27%
Matrix_437	MYC2	Not Available	50.25%