PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_114
Name: EPR1; AT3G10113
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	75.43%
Matrix_157	LHY; RVE2	Not Available	74.40%
Matrix_383	CCA1	Not Available	73.87%
Matrix_160	RVE1	Not Available	73.33%
Matrix_423	AT3G04030	Not Available	72.26%
Matrix_8	KAN1	Not Available	71.72%
Matrix_210	ARR1	Not Available	70.85%
Matrix_4	ARR14	Not Available	70.61%
Matrix_142	ZFP8	Not Available	68.76%
Matrix_279	HRS1	Not Available	68.67%
Matrix_63	ARR10	Not Available	68.40%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	67.61%
Matrix_429	KAN4	Not Available	67.29%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	66.29%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	66.02%
Matrix_491	AT1G68670; AT3G25790	Not Available	65.40%
Matrix_112	TBP2; TFIID-1	Not Available	65.17%
Matrix_97	APRR2	Not Available	65.01%
Matrix_168	AHL25	Not Available	64.81%
Matrix_431	ATHB21; HB-3	Not Available	64.57%
Matrix_324	AT2G01060	Not Available	64.03%
Matrix_341	HMGA	Not Available	63.71%
Matrix_361	AT1G25550	Not Available	63.66%
Matrix_46	AT4G21895	Not Available	63.48%
Matrix_391	AHL20	Not Available	63.43%
Matrix_442	AT5G62260	Not Available	63.29%
Matrix_16	AT3G04450; PHL1	Not Available	63.15%
Matrix_421	GLK1	Not Available	63.05%
Matrix_88	AHL12	Not Available	62.94%
Matrix_69	AT2G03500	Not Available	62.80%
Matrix_248	ZFP5	Not Available	62.62%
Matrix_380	ATMYR1	Not Available	62.45%
Matrix_99	DOF4.7	Not Available	62.41%
Matrix_38	SPL14	Not Available	61.46%
Matrix_37	GATA27	Not Available	61.32%
Matrix_100	AT1G48610	Not Available	61.25%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	61.12%
Matrix_162	AtPHR1	Not Available	61.05%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	61.03%
Matrix_9	AT5G04760	Not Available	60.91%
Matrix_336	AT5G08520	Not Available	60.59%
Matrix_185	AHL25	Not Available	60.40%
Matrix_434	ARR11	Not Available	60.29%
Matrix_14	ZCW32; AT5G62610	Not Available	59.95%
Matrix_241	HB-1; AT5G44180	Not Available	59.77%
Matrix_411	DOF5.6	Not Available	59.65%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	59.57%
Matrix_425	TIFY2A	Not Available	59.50%
Matrix_177	ADOF2	Not Available	59.37%
Matrix_286	GATA7	Not Available	59.35%
Matrix_519	ATDOF2.4	Not Available	59.13%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	59.04%
Matrix_483	ICU4	Not Available	59.01%
Matrix_258	WOX13	Not Available	59.00%
Matrix_444	AT1G19485; AT4G17950	Not Available	58.70%
Matrix_81	YAB1	Not Available	58.32%
Matrix_125	AHL12	Not Available	58.24%
Matrix_93	YAB5	Not Available	58.21%
Matrix_72	CDF2	Not Available	58.17%
Matrix_374	AT5G07580; AT5G61590	Not Available	58.14%
Matrix_512	HAT3	Not Available	58.12%
Matrix_12	EIN3; EIL2	Not Available	58.08%
Matrix_447	RVE1	Not Available	58.05%
Matrix_255	cdf3	Not Available	58.00%
Matrix_505	GATA8	Not Available	57.97%
Matrix_178	HSFB2A	Not Available	57.77%
Matrix_78	AT3G45610	Not Available	57.74%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	57.66%
Matrix_435	ATHB51	Not Available	57.55%
Matrix_17	WRKY22	Not Available	57.40%
Matrix_143	GATA14; GATA6; GATA5	Not Available	57.29%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	57.28%
Matrix_126	RBE	Not Available	57.23%
Matrix_32	AHL25	Not Available	57.22%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	57.21%
Matrix_384	ATWRKY17	Not Available	56.93%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	56.79%
Matrix_502	AT3G13040	Not Available	56.53%
Matrix_236	CCA1	Not Available	56.40%
Matrix_102	WRKY21	Not Available	56.28%
Matrix_35	YAB5; YAB3	Not Available	56.22%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	56.13%
Matrix_227	AT1G64620	Not Available	56.11%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	56.01%
Matrix_96	TMO6	Not Available	55.98%
Matrix_239	AT5G04390	Not Available	55.97%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.74%
Matrix_198	STZ; C2H2; AZF3	Not Available	55.66%
Matrix_212	ATHB-12	Not Available	55.65%
Matrix_62	HAT5	Not Available	55.55%
Matrix_441	ATHB5	Not Available	55.53%
Matrix_461	ATHB12	Not Available	55.43%
Matrix_226	GATA1	Not Available	55.43%
Matrix_328	AT1G76580	Not Available	55.36%
Matrix_75	WRKY29	Not Available	55.20%
Matrix_274	EDF3	Not Available	55.14%
Matrix_87	AT1G19000	Not Available	55.11%
Matrix_354	AHL12	Not Available	55.02%
Matrix_319	TEM1	Not Available	54.97%
Matrix_21	HSFC1	Not Available	54.89%
Matrix_167	ZAT6	Not Available	54.80%
Matrix_159	TEM2	Not Available	54.65%
Matrix_296	GBF2	Not Available	54.65%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	54.60%
Matrix_67	GLK1	Not Available	54.55%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	54.52%
Matrix_300	bZIP68; bZIP16	Not Available	54.36%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	54.35%
Matrix_333	GATA3	Not Available	54.29%
Matrix_318	ATHB16	Not Available	54.28%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	54.27%
Matrix_259	AT1G50680; AT1G51120	Not Available	54.27%
Matrix_181	Dof5.7	Not Available	54.26%
Matrix_379	RHL41	Not Available	54.23%
Matrix_436	AT3G49930; AZF1	Not Available	54.16%
Matrix_347	WOX14; WOX10	Not Available	54.11%
Matrix_408	GATA12	Not Available	54.11%
Matrix_503	AT2G37430; AT3G53600	Not Available	54.01%
Matrix_370	WRKY50; WRKY51	Not Available	53.96%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	53.88%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	53.83%
Matrix_452	MYB46	Not Available	53.80%
Matrix_195	GATA2; GATA4	Not Available	53.78%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	53.70%
Matrix_175	Dof5.7	Not Available	53.40%
Matrix_141	AT3G25990	Not Available	53.40%
Matrix_70	GATA26	Not Available	53.16%
Matrix_84	AtGRF6	Not Available	53.03%
Matrix_392	ARR2	Not Available	52.99%
Matrix_182	ATHB6	Not Available	52.99%
Matrix_308	INO	Not Available	52.98%
Matrix_415	WRKY27	Not Available	52.96%
Matrix_521	AHL20	Not Available	52.85%
Matrix_3	WRKY48	Not Available	52.84%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	52.82%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	52.79%
Matrix_54	AHL20	Not Available	52.74%
Matrix_71	ATHB7	Not Available	52.59%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	52.57%
Matrix_302	HAT1; HAT2	Not Available	52.56%
Matrix_206	CUC1; ANAC100	Not Available	52.55%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	52.51%
Motif_115	HSEs binding site motif	Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?	52.42%
Matrix_152	EIL1; AT5G65100	Not Available	52.41%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	52.40%
Motif_184	PROXBBNNAPA	prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	52.40%
Matrix_501	DAG2	Not Available	52.37%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	52.33%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	52.10%
Matrix_201	AT1G74840	Not Available	51.97%
Matrix_418	KNAT6; KNAT2	Not Available	51.88%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	51.87%
Matrix_188	SPL4	Not Available	51.85%
Matrix_204	WOX13	Not Available	51.79%
Matrix_487	AT1G29160	Not Available	51.76%
Matrix_327	ARR11	Not Available	51.70%
Matrix_416	ASL5	Not Available	51.68%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	51.53%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	51.31%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	51.21%
Matrix_457	TGA2	Not Available	51.16%
Matrix_243	RAP2.12; RAP2.2	Not Available	51.15%
Matrix_261	ATERF-1	Not Available	51.10%
Matrix_382	AT3G04850	Not Available	50.98%
Motif_253	S1FSORPL21	S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity	50.78%
Motif_70	CANBNNAPA	Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor	50.74%
Matrix_291	EDF3	Not Available	50.52%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	50.48%
Matrix_366	ARR14	Not Available	50.48%
Matrix_120	BEE2	Not Available	50.37%
Matrix_26	ATMYB3; MYB24	Not Available	50.35%
Matrix_471	KAN4	Not Available	50.27%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	50.22%
Matrix_109	GBF3	Not Available	50.19%
Matrix_237	MYB55	Not Available	50.17%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	50.13%
Matrix_393	REM1	Not Available	50.08%
Matrix_465	MYC4	Not Available	50.03%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	50.00%