PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_10
Name: STY1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_174	ZAT2	Not Available	71.44%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	64.93%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	64.57%
Matrix_472	ZN_C2_H2	Not Available	63.75%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	61.87%
Matrix_87	AT1G19000	Not Available	60.91%
Matrix_221	SPL7	Not Available	59.81%
Motif_554	AtLHY; AtCCA1	LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms	59.75%
Matrix_188	SPL4	Not Available	59.32%
Matrix_211	MYB3	Not Available	59.32%
Matrix_204	WOX13	Not Available	59.19%
Matrix_273	ANAC55	Not Available	58.34%
Matrix_41	anac058	Not Available	58.08%
Matrix_274	EDF3	Not Available	58.06%
Matrix_206	CUC1; ANAC100	Not Available	57.42%
Motif_535	ACIPVPAL2	ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene	57.32%
Matrix_388	SNZ; SMZ; TOE2	Not Available	57.09%
Motif_377	SURE2STPAT21	Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	57.04%
Matrix_476	bHLH115; bHLH34	Not Available	56.51%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	56.31%
Matrix_137	SPL1; SPL12	Not Available	56.27%
Matrix_233	MYC3	Not Available	56.18%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	56.07%
Matrix_193	RAV1	Not Available	56.04%
Matrix_265	NGA3	Not Available	56.04%
Matrix_333	GATA3	Not Available	55.99%
Matrix_320	MYC4	Not Available	55.85%
Matrix_327	ARR11	Not Available	55.74%
Matrix_143	GATA14; GATA6; GATA5	Not Available	55.72%
Matrix_169	E2F1	Not Available	55.68%
Matrix_260	CAMTA3	Not Available	55.63%
Matrix_203	GATA9; GATA12	Not Available	55.54%
Matrix_437	MYC2	Not Available	55.52%
Matrix_21	HSFC1	Not Available	55.38%
Matrix_14	ZCW32; AT5G62610	Not Available	55.37%
Matrix_70	GATA26	Not Available	55.34%
Matrix_247	PIF3	Not Available	55.21%
Motif_166	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	55.19%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.19%
Matrix_1	TOE2	Not Available	55.04%
Motif_546	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	54.95%
Matrix_259	AT1G50680; AT1G51120	Not Available	54.90%
Matrix_424	MYB59	Not Available	54.85%
Motif_5	SORLREP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	54.77%
Matrix_422	TOE1	Not Available	54.68%
Matrix_299	PFG3	Not Available	54.49%
Matrix_60	AT1G01260; AT5G57150	Not Available	54.39%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	54.35%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	54.30%
Matrix_393	REM1	Not Available	54.21%
Matrix_20	ANAC030; NST1; NAC066	Not Available	53.97%
Matrix_470	WRKY18	Not Available	53.92%
Matrix_150	UNE10; PIF7	Not Available	53.90%
Matrix_225	MYB52	Not Available	53.69%
Matrix_319	TEM1	Not Available	53.51%
Matrix_411	DOF5.6	Not Available	53.51%
Motif_172	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.48%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.47%
Matrix_129	ABF1	Not Available	53.44%
Matrix_337	MYB46	Not Available	53.41%
Matrix_141	AT3G25990	Not Available	53.39%
Motif_318	CGCGBOXAT	CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs	53.39%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	53.30%
Matrix_166	TGA4	Not Available	53.23%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.11%
Matrix_182	ATHB6	Not Available	53.10%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.90%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	52.84%
Matrix_354	AHL12	Not Available	52.78%
Matrix_362	DEAR3	Not Available	52.73%
Matrix_254	MYB52	Not Available	52.71%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	52.69%
Motif_553	BOX2PSGS2	Box 2 in glutamine synthetase (GS2) gene in pea; Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2	52.63%
Matrix_332	SPT; ALC	Not Available	52.60%
Matrix_367	REM1	Not Available	52.58%
Matrix_177	ADOF2	Not Available	52.48%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	52.46%
Motif_437	ANAERO2CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)	52.41%
Motif_384	SITEIOSPCNA	Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation	52.41%
Matrix_420	ANAC58	Not Available	52.41%
Matrix_159	TEM2	Not Available	52.39%
Matrix_308	INO	Not Available	52.36%
Matrix_291	EDF3	Not Available	52.24%
Matrix_315	MYB111	Not Available	52.22%
Matrix_512	HAT3	Not Available	52.16%
Matrix_116	ANAC55	Not Available	52.09%
Matrix_418	KNAT6; KNAT2	Not Available	52.08%
Matrix_311	TGA1	Not Available	51.97%
Matrix_120	BEE2	Not Available	51.96%
Matrix_71	ATHB7	Not Available	51.94%
Matrix_307	RGL2; RGL3	Not Available	51.78%
Matrix_84	AtGRF6	Not Available	51.77%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	51.61%
Matrix_410	TOE2	Not Available	51.57%
Matrix_518	AT2G21230	Not Available	51.55%
Matrix_170	AT5G47660	Not Available	51.45%
Motif_249	DPBF1&2 binding site motif	A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system	51.31%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	51.22%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	51.20%
Matrix_145	GBF4; AT5G44080	Not Available	51.19%
Motif_465	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	51.15%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	51.12%
Matrix_396	AP3	Not Available	51.08%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	51.07%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.04%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	51.04%
Matrix_322	NST3; ANAC015; BRN2	Not Available	50.85%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	50.85%
Matrix_469	NAC041; NAC083	Not Available	50.78%
Matrix_450	SPL7	Not Available	50.75%
Motif_61	PALBOXLPC	Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation	50.67%
Matrix_37	GATA27	Not Available	50.64%
Matrix_482	AT2G25650; AT4G00270	Not Available	50.59%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	50.55%
Matrix_463	HAT3.1	Not Available	50.50%
Motif_213	ZML2	The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis	50.44%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	50.33%
Motif_692	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	50.32%
Motif_22	RYREPEATLEGUMINBOX	RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean	50.31%
Matrix_64	PIF5	Not Available	50.29%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	50.28%
Matrix_165	KNAT1	Not Available	50.23%
Matrix_17	WRKY22	Not Available	50.22%
Matrix_519	ATDOF2.4	Not Available	50.14%
Matrix_447	RVE1	Not Available	50.11%
Motif_73	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	50.11%
Matrix_220	WRKY18	Not Available	50.04%
Matrix_416	ASL5	Not Available	50.03%