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InterPro id
IPR016262
Description
RNA polymerase sigma factor, SigB/SigC/SigD, plastid
Number of genes
40

InterPro distribution

aly
Arabidopsis lyrata(3 genes)
ath
Arabidopsis thaliana(3 genes)
bdi
Brachypodium distachyon(3 genes)
cpa
Carica papaya(1 genes)
fve
Fragaria vesca(1 genes)
lja
Lotus japonicus(1 genes)
mdo
Malus domestica(1 genes)
mes
Manihot esculenta(1 genes)
mtr
Medicago truncatula(1 genes)
osa
Oryza sativa ssp. japonica(3 genes)
osaindica
Oryza sativa ssp. indica(3 genes)
ppa
Physcomitrella patens(3 genes)
ptr
Populus trichocarpa(3 genes)
rco
Ricinus communis(2 genes)
sbi
Sorghum bicolor(2 genes)
tca
Theobroma cacao(2 genes)
vvi
Vitis vinifera(2 genes)
zma
Zea mays(5 genes)
 
Tandem/block/both gene duplicate percentage within InterPro domain :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AL1G08200 aly name=fgenesh2_kg.1__869__AT1G08540.1;pid=470915;prot=eq;tid=470915 + scaffold_1 coding
AL4G22560 aly name=fgenesh2_kg.4__1742__AT2G36990.1;pid=482682;prot=eq;tid=482682 - scaffold_4 coding
AL5G23950 aly name=Al_scaffold_0005_2291;pid=866812;prot=eq;tid=898325 - scaffold_5 coding
CP00056G00120 cpa name=evm.TU.supercontig_56.12;pid=evm.TU.supercontig_56.12;prot=eq;transcript=eq + supercontig_56 coding
LJ1G033040 lja partial;prot=eq;transcript=eq;scaffold=CM0017;name=chr1.CM0017.250.nc - chr1 coding
MD00G136300 mdo transcript=eq;prot=eq;pid=MDP0000122421;tid=MDP0000122421;contig=MDC005807.364 + MDC005807.364 coding
OSINDICA_04G04650 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC016241; + Chr04 coding
OSINDICA_08G13270 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC025775; + Chr08 coding
OSINDICA_03G14820 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC005957; + Chr03 coding
OS08G14450 osa RNA polymerase sigma factor, putative, expressed transcript=eq;prot=eq; + 8 coding
OS03G16430 osa RNA polymerase sigma factor, putative, expressed transcript=eq;prot=eq; + 3 coding
OS11G26160 osa RNA polymerase sigma factor, putative, expressed transcript=eq;prot=eq; + 11 coding
PP00028G00440 ppa NULL name=estExt_gwp_gw1.C_280061,pid=178031,prot=eq,tid=178031 - scaffold_28 coding
PP00028G00420 ppa NULL name=estExt_fgenesh1_pg.C_280046,pid=160930,prot=eq,tid=160930 + scaffold_28 coding
PP00034G01990 ppa NULL name=estExt_Genewise1.C_340313,pid=206687,prot=eq,tid=206687 - scaffold_34 coding
PT19G05910 ptr PACid=17310828;name=POPTR_0019s06100;alias=pt009832m; transcript=eq;prot=eq;protein_id=17310828; + scaffold_19 coding
PT06G12570 ptr PACid=17317706;name=POPTR_0006s12760;alias=pt017486m,Pt-SIGF.1,fgenesh4_pm.C_scaffold_28000088; transcript=eq;prot=eq;protein_id=17317706; - scaffold_6 coding
PT13G06580 ptr PACid=17333527;name=POPTR_0013s06770;alias=pt030498m,Pt-SIGB.2,estExt_fgenesh4_pm.C_LG_XIII0293; transcript=eq;prot=eq;protein_id=17333527; - scaffold_13 coding
RC30078G00980 rco name=30078.m002307;gene=30078.t000100;note=30078.t000100;transcript=eq;prot=eq - 30078 coding
RC30148G00100 rco name=30148.m001412;gene=30148.t000011;note=30148.t000011;transcript=eq;prot=eq - 30148 coding
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