InterPro domain page  


InterPro id
IPR009287
Description
Transcription initiation Spt4
Number of genes
22

InterPro distribution

aly
Arabidopsis lyrata(2 genes)
ath
Arabidopsis thaliana(2 genes)
bdi
Brachypodium distachyon(1 genes)
gma
Glycine max(2 genes)
mdo
Malus domestica(3 genes)
mtr
Medicago truncatula(2 genes)
osa
Oryza sativa ssp. japonica(1 genes)
ppa
Physcomitrella patens(1 genes)
ptr
Populus trichocarpa(2 genes)
rco
Ricinus communis(1 genes)
sbi
Sorghum bicolor(1 genes)
smo
Selaginella moellendorffii(1 genes)
tca
Theobroma cacao(1 genes)
vvi
Vitis vinifera(1 genes)
zma
Zea mays(1 genes)
 
Tandem/block/both gene duplicate percentage within InterPro domain :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AL6G08560 aly name=scaffold_600893.1;pid=908836;prot=eq;tid=940349 + scaffold_6 coding
AL8G30280 aly name=scaffold_803063.1;pid=919663;prot=eq;tid=951176 + scaffold_8 coding
GM07G40390 gma 07 pid=16269404;transcript=eq;prot=eq;name=Glyma07g40390.1 - Gm07 coding
GM17G00250 gma 17 pid=16303901;transcript=eq;prot=eq;name=Glyma17g00250.1 + Gm17 coding
MD00G230310 mdo transcript=eq;prot=eq;pid=MDP0000125183;tid=MDP0000125183;contig=MDC009987.253 + MDC009987.253 coding
MD00G230360 mdo transcript=eq;prot=eq;pid=MDP0000187924;tid=MDP0000187924;contig=MDC009987.257 - MDC009987.257 coding
MD00G275650 mdo transcript=eq;prot=eq;pid=MDP0000139608;tid=MDP0000139608;contig=MDC011784.283 + MDC011784.283 coding
OS07G43060 osa transcription elongation factor SPT4 homolog 1, putative, expressed transcript=eq;prot=eq; - 7 coding
PP00077G00670 ppa NULL name=fgenesh2_pm.scaffold_77000007,pid=232370,prot=eq,tid=232370 + scaffold_77 coding
PT08G00110 ptr PACid=17315786;name=POPTR_0008s00300;alias=pt028187m,estExt_fgenesh4_pg.C_LG_VIII0009; transcript=eq;prot=eq;protein_id=17315786; + scaffold_8 coding
PT10G25020 ptr PACid=17344281;name=POPTR_0010s26160;alias=pt013120m,grail3.0106001001; transcript=eq;prot=eq;protein_id=17344281; - scaffold_10 coding
RC30131G04380 rco name=30131.m007293;gene=30131.t000444;note=30131.t000444;transcript=eq;prot=eq + 30131 coding
SB02G039750 sbi 2 prot=eq;pid=5052060;tid=5052060 - chr_2 coding
SM00003G06950 smo proteinId=80011;transcriptId=80011;name=e_gw1.3.885.1;transcript=eq;prot=eq + scaffold_3 coding
VV10G07360 vvi name=GSVIVG01034346001; transcript=eq;prot=eq;name=GSVIVG01034346001;pid=GSVIVG01034346001;tid=GSVIVT01034346001; + chr10 coding
AT5G08565 ath Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transcription initiation Spt4-like protein transcript=eq;prot=eq; + 5 coding
AT5G63670 ath SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;SPT4 homolog 2 transcript=eq;prot=eq; + 5 coding
BD1G21400 bdi zinc ion binding (Blast2GO) pid=Bradi1g21400.1;tid=Bradi1g21400.1;GeneName=Bradi1g21400;transcript=eq;prot=eq - Bd1 coding
MT3G092730 mtr Transcription elongation factor SPT4 homolog 2 (AHRD V1 ***- Q94C60); contains Interpro domain(s) IPR009287 Transcription initiation Spt4 transcript=eq;prot=eq;pid=Medtr3g092730.1; + 3 coding
MT3G092770 mtr Transcription elongation factor SPT4 homolog 2 (AHRD V1 ***- Q94C60); contains Interpro domain(s) IPR009287 Transcription initiation Spt4 transcript=eq;prot=eq;pid=Medtr3g092770.1; + 3 coding
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