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InterPro id
IPR009210
Description
Predicted eukaryotic LigT
Number of genes
15

InterPro distribution

aly
Arabidopsis lyrata(1 genes)
ath
Arabidopsis thaliana(2 genes)
cre
Chlamydomonas reinhardtii(1 genes)
gma
Glycine max(1 genes)
mdo
Malus domestica(1 genes)
mes
Manihot esculenta(1 genes)
osa
Oryza sativa ssp. japonica(1 genes)
ptr
Populus trichocarpa(2 genes)
rco
Ricinus communis(1 genes)
sbi
Sorghum bicolor(1 genes)
tca
Theobroma cacao(1 genes)
vca
Volvox carteri(1 genes)
zma
Zea mays(1 genes)
 
Tandem/block/both gene duplicate percentage within InterPro domain :
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Index of genes with 1 constraints:

Page 1 of 1, showing 15 records out of 15 total, starting on record 1, ending on 15

gene_id species description comment strand chr type
AL3G17250 aly name=fgenesh1_pg.C_scaffold_3001512;pid=341749;prot=eq;tid=341749 + scaffold_3 coding
CR01G01650 cre name=au.g1131_t1;pid=282592;prot=eq;tid=282599;transcript=eq - chromosome_1 coding
GM15G02100 gma 15 pid=16297337;transcript=eq;prot=eq;name=Glyma15g02100.1 - Gm15 coding
MD00G390940 mdo transcript=eq;prot=eq;pid=MDP0000949412;tid=MDP0000949412;contig=MDC017714.153 - MDC017714.153 coding
OS01G13100 osa KH domain containing protein, putative, expressed transcript=eq;prot=eq; + 1 coding
PT01G18530 ptr PACid=17344323;name=POPTR_0001s18720;alias=pt038600m; transcript=eq;prot=eq;protein_id=17344323; + scaffold_1 coding
PT03G03990 ptr PACid=17311991;name=POPTR_0003s04940;alias=pt023683m; transcript=eq;prot=eq;protein_id=17311991; - scaffold_3 coding
RC30146G01200 rco name=30146.m003543;gene=30146.t000120;note=30146.t000120;transcript=eq;prot=eq - 30146 coding
SB03G000800 sbi 3 prot=eq;pid=5052360;tid=5052360 - chr_3 coding
VC00050G00980 vca name=fgenesh4_pg.C_scaffold_50000098;pid=96252;prot=eq;tid=96252 + scaffold_50 coding
AT3G16220 ath Predicted eukaryotic LigT; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Predicted eukaryotic LigT (InterPro:IPR009210), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16230.3); Has 246 Blast hits to 244 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 11; Plants - 39; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).;Predicted eukaryotic LigT transcript=eq;prot=eq; + 3 coding
AT3G16230 ath Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).;Predicted eukaryotic LigT transcript=eq;prot=eq; + 3 coding
ME07351G00450 mes PACid=17984117;RNAname=cassava4.1_006017m;GeneName=cassava4.1_006017m.g;transcript=eq;prot=eq - scaffold07351 coding
TC06G008000 tca RNAname=Tc06_t008000;GeneName=Tc06_g008000;transcript=eq;prot=eq - Tc06 coding
ZM03G00540 zma name=GRMZM2G093104;tid=GRMZM2G093104_T01;pid=GRMZM2G093104_P01;transcript=eq;prot=eq; - 3 coding
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