InterPro domain page  


InterPro id
IPR006463
Description
tRNA-i(6)A37 modification enzyme MiaB
Number of genes
24

InterPro distribution

aly
Arabidopsis lyrata(1 genes)
ath
Arabidopsis thaliana(1 genes)
bdi
Brachypodium distachyon(1 genes)
cre
Chlamydomonas reinhardtii(1 genes)
fve
Fragaria vesca(1 genes)
gma
Glycine max(1 genes)
lja
Lotus japonicus(1 genes)
mdo
Malus domestica(3 genes)
mes
Manihot esculenta(1 genes)
mrcc299
Micromonas sp. RCC299(2 genes)
olu
Ostreococcus lucimarinus(2 genes)
osa
Oryza sativa ssp. japonica(1 genes)
ppa
Physcomitrella patens(1 genes)
ptr
Populus trichocarpa(1 genes)
rco
Ricinus communis(1 genes)
sbi
Sorghum bicolor(1 genes)
smo
Selaginella moellendorffii(1 genes)
tca
Theobroma cacao(1 genes)
vca
Volvox carteri(1 genes)
vvi
Vitis vinifera(1 genes)
 
Tandem/block/both gene duplicate percentage within InterPro domain :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AL7G04430 aly name=fgenesh2_kg.7__431__AT4G36390.1;pid=490998;prot=eq;tid=490998 + scaffold_7 coding
CR18G00750 cre name=estExt_fgenesh1_pg.C_180048;pid=348019;prot=eq;tid=348026;transcript=eq + scaffold_18 coding
GM01G37500 gma 01 pid=16245486;transcript=eq;prot=eq;name=Glyma01g37500.1 + Gm01 coding
LJ2G023010 lja prot=eq;transcript=eq;scaffold=CM0249;name=chr2.CM0249.420.nc + chr2 coding
MD02G011900 mdo transcript=eq;prot=eq;pid=MDP0000263107;tid=MDP0000263107;contig=MDC001423.304 + 2 coding
MD15G018200 mdo transcript=eq;prot=eq;pid=MDP0000259885;tid=MDP0000259885;contig=MDC016496.170 - 15 coding
MD12G018590 mdo transcript=eq;prot=eq;pid=MDP0000137939;tid=MDP0000137939;contig=MDC012866.391 - 12 coding
MRCC299_09G03730 mrcc299 name=gw2.09.110.1;pid=66643;prot=eq;tid=66643;transcript=eq - Chr_09 coding
MRCC299_02G09460 mrcc299 name=e_gw2.02.173.1;pid=78530;prot=eq;tid=78530;transcript=eq + Chr_02 coding
OL19G00530 olu NULL name=e_gwEuk.19.17.1,pid=42298,prot=eq,tid=42298 + Chr_19 coding
OL02G00620 olu NULL name=gwEuk.2.179.1,pid=2500,prot=eq,tid=2500 - Chr_2 coding
OS11G38030 osa CDK5RAP1, putative, expressed transcript=eq;prot=eq; - 11 coding
PP00025G00440 ppa NULL name=e_gw1.25.53.1,pid=118611,prot=eq,tid=118611 - scaffold_25 coding
PT07G12940 ptr PACid=17316867;name=POPTR_0007s13510;alias=pt025057m; transcript=eq;prot=eq;protein_id=17316867; + scaffold_7 coding
RC29634G00060 rco name=29634.m002060;gene=29634.t000006;note=29634.t000006;transcript=eq;prot=eq - 29634 coding
SB05G023010 sbi 5 prot=eq;pid=5056710;tid=5056710 - chr_5 coding
SM00059G02020 smo proteinId=180500;transcriptId=180500;name=estExt_Genewise1Plus.C_590405;transcript=eq;prot=eq - scaffold_59 coding
VC00007G00280 vca name=e_gw1.7.19.1;pid=57473;prot=eq;tid=57473 - scaffold_7 coding
VV04G01360 vvi name=GSVIVG01018858001; transcript=eq;prot=eq;name=GSVIVG01018858001;pid=GSVIVG01018858001;tid=GSVIVT01018858001; + chr4 coding
AT4G36390 ath Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, transferase activity, catalytic activity; INVOLVED IN: RNA modification, tRNA modification; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Methylthiotransferase, conserved site (InterPro:IPR020612), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1); Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356; Bacteria - 9631; Metazoa - 288; Fungi - 1; Plants - 108; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink).;Methylthiotransferase transcript=eq;prot=eq; - 4 coding
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