Selection of genes

Index of genes with 3 constraints:
  • gene family : HOM002308
  • species : ath
  • interpro domain : IPR012337
  • The 'interpro' flag in the table indicates whether or not the gene adheres to all 3 constraints, or just to the top 2 constraints (see phylogenetic profile of the previous page.

    Page 1 of 1, showing 2 records out of 2 total, starting on record 1, ending on 2

    gene_id species description comment strand chr outlier interpro
    AT1G15420 ath CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). transcript=eq;prot=eq; - 1 No false
    AT5G11240 ath transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 8385 Blast hits to 5100 proteins in 391 species: Archae - 41; Bacteria - 3255; Metazoa - 1724; Fungi - 1723; Plants - 553; Viruses - 0; Other Eukaryotes - 1089 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; + 5 No false
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