Selection of genes

Index of genes with 3 constraints:
  • gene family : HOM001233
  • species : ath
  • interpro domain : IPR012337
  • The 'interpro' flag in the table indicates whether or not the gene adheres to all 3 constraints, or just to the top 2 constraints (see phylogenetic profile of the previous page.

    Page 1 of 1, showing 6 records out of 6 total, starting on record 1, ending on 6

    gene_id species description comment strand chr outlier interpro
    AT2G41340 ath NRPE5-like protein of unknown function; homologous to budding yeast RPB5;RNA polymerase II fifth largest subunit, D transcript=eq;prot=eq; + 2 No false
    AT3G16680 ath DNA binding;DNA-directed RNA polymerases; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G22320.1); Has 450 Blast hits to 450 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 164; Plants - 81; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).;DNA binding;DNA-directed RNA polymerases transcript=eq;prot=eq; + 3 No false
    AT3G22320 ath Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.;Eukaryotic rpb5 RNA polymerase subunit family protein transcript=eq;prot=eq; - 3 No false
    AT3G54490 ath NRPE5-like protein of unknown function; homologous to budding yeast RPB5;RNA polymerase II fifth largest subunit, E transcript=eq;prot=eq; + 3 No false
    AT3G57080 ath Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB5.;Eukaryotic rpb5 RNA polymerase subunit family protein transcript=eq;prot=eq; + 3 No false
    AT5G57980 ath NRPB5-like protein of unknown function; homologous to budding yeast RPB5;RNA polymerase II fifth largest subunit, C transcript=eq;prot=eq; - 5 No false
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