Selection of genes

Index of genes with 3 constraints:
  • gene family : HOM000206
  • species : ath
  • interpro domain : IPR012337
  • The 'interpro' flag in the table indicates whether or not the gene adheres to all 3 constraints, or just to the top 2 constraints (see phylogenetic profile of the previous page.

    Page 1 of 6, showing 20 records out of 117 total, starting on record 1, ending on 20

    gene_id species description comment strand chr outlier interpro
    AT1G06630 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; + 1 No false
    AT1G13780 ath F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G27750.1); Has 2022 Blast hits to 1978 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2020; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein transcript=eq;prot=eq; + 1 No false
    AT1G16930 ath F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G80470.1); Has 2349 Blast hits to 2299 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2347; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein transcript=eq;prot=eq; + 1 No false
    AT1G16940 ath F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G78750.1); Has 1457 Blast hits to 1436 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 1429; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein transcript=eq;prot=eq; + 1 No false
    AT1G19070 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G22280.1); Has 1388 Blast hits to 1366 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1388; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 1 No false
    AT1G21990 ath F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1523 Blast hits to 1486 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1523; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein transcript=eq;prot=eq; - 1 No false
    AT1G32020 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT2G26030.3); Has 1150 Blast hits to 1134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 1 No false
    AT1G47915 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G48400.1); Has 1076 Blast hits to 1061 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1076; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 1 No false
    AT1G47920 ath RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G48400.1); Has 444 Blast hits to 433 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; + 1 No false
    AT1G48390 ath RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G48400.1); Has 494 Blast hits to 486 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 494; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; - 1 No false
    AT1G48400 ath F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G48390.1); Has 116287 Blast hits to 17670 proteins in 977 species: Archae - 853; Bacteria - 43940; Metazoa - 20597; Fungi - 11169; Plants - 7279; Viruses - 1793; Other Eukaryotes - 30656 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein transcript=eq;prot=eq; - 1 No false
    AT1G51370 ath F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G53840.1); Has 2026 Blast hits to 1985 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2026; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein transcript=eq;prot=eq; + 1 No false
    AT1G52650 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G13960.1); Has 1747 Blast hits to 1702 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; + 1 No false
    AT1G56610 ath Protein with RNI-like/FBD-like domains; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G14096.1); Has 884 Blast hits to 868 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 884; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein with RNI-like/FBD-like domains transcript=eq;prot=eq; + 1 No false
    AT1G58310 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G14096.1); Has 1992 Blast hits to 1933 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1992; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; + 1 No false
    AT1G60400 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G60410.1); Has 2069 Blast hits to 2030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2069; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; + 1 No false
    AT1G60410 ath F-box family protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G60400.1); Has 1763 Blast hits to 1723 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1763; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 1 No false
    AT1G64540 ath F-box/FBD-like domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G35995.2); Has 1519 Blast hits to 1491 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1519; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/FBD-like domains containing protein transcript=eq;prot=eq; + 1 No false
    AT1G66290 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G66300.1); Has 2038 Blast hits to 1993 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2038; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; - 1 No false
    AT1G66300 ath F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G66310.1); Has 1781 Blast hits to 1732 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1781; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein transcript=eq;prot=eq; - 1 No false
    << previous
    1 | 2 | 3 | 4 | 5 | 6 next >>