Selection of genes

Index of genes with 3 constraints:
  • gene family : HOM000175
  • species : ath
  • interpro domain : IPR012337
  • The 'interpro' flag in the table indicates whether or not the gene adheres to all 3 constraints, or just to the top 2 constraints (see phylogenetic profile of the previous page.

    Page 1 of 1, showing 13 records out of 13 total, starting on record 1, ending on 13

    gene_id species description comment strand chr outlier interpro
    AT1G08880 ath Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.;Histone superfamily protein transcript=eq;prot=eq; - 1 No false
    AT1G51060 ath Encodes HTA10, a histone H2A protein.;histone H2A 10 transcript=eq;prot=eq; + 1 No false
    AT1G52740 ath Encodes HTA9, a histone H2A protein.;histone H2A protein 9 transcript=eq;prot=eq; + 1 No false
    AT1G54690 ath Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.;gamma histone variant H2AX transcript=eq;prot=eq; - 1 No false
    AT2G38810 ath Encodes HTA8, a histone H2A protein.;histone H2A 8 transcript=eq;prot=eq; - 2 No false
    AT3G20670 ath Encodes HTA13, a histone H2A protein.;histone H2A 13 transcript=eq;prot=eq; + 3 No false
    AT3G54560 ath Encodes HTA11, a histone H2A protein.;histone H2A 11 transcript=eq;prot=eq; + 3 No false
    AT4G13570 ath Encodes HTA4, a histone H2A protein.;histone H2A 4 transcript=eq;prot=eq; + 4 No false
    AT4G27230 ath Encodes HTA2, a histone H2A protein.;histone H2A 2 transcript=eq;prot=eq; - 4 No false
    AT5G02560 ath Encodes HTA12, a histone H2A protein.;histone H2A 12 transcript=eq;prot=eq; + 5 No false
    AT5G27670 ath Encodes HTA7, a histone H2A protein.;histone H2A 7 transcript=eq;prot=eq; - 5 No false
    AT5G54640 ath Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.;Histone superfamily protein transcript=eq;prot=eq; + 5 No false
    AT5G59870 ath Encodes HTA6, a histone H2A protein.;histone H2A 6 transcript=eq;prot=eq; - 5 No false
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