Selection of genes

Index of genes with 3 constraints:
  • gene family : HOM000084
  • species : ath
  • interpro domain : IPR012337
  • The 'interpro' flag in the table indicates whether or not the gene adheres to all 3 constraints, or just to the top 2 constraints (see phylogenetic profile of the previous page.

    Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

    gene_id species description comment strand chr outlier interpro
    AT1G02335 ath germin-like protein subfamily 2 member 2 precursor (GL22); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 2264 Blast hits to 2183 proteins in 312 species: Archae - 0; Bacteria - 520; Metazoa - 1; Fungi - 98; Plants - 1608; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).;germin-like protein subfamily 2 member 2 precursor transcript=eq;prot=eq; - 1 No false
    AT1G09560 ath germin-like protein (GLP5);germin-like protein 5 transcript=eq;prot=eq; + 1 No false
    AT1G10460 ath germin-like protein (GLP7);germin-like protein 7 transcript=eq;prot=eq; - 1 No false
    AT1G18970 ath Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).;germin-like protein 4 transcript=eq;prot=eq; - 1 No false
    AT1G18980 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein 4 (TAIR:AT1G18970.1); Has 1578 Blast hits to 1564 proteins in 115 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 29; Plants - 1449; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 1 No false
    AT1G72610 ath germin-like protein (GLP1);germin-like protein 1 transcript=eq;prot=eq; - 1 No false
    AT1G74820 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1566 Blast hits to 1545 proteins in 124 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 33; Plants - 1424; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 1 No false
    AT3G04150 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04170.1).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 3 No false
    AT3G04170 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04150.1); Has 1493 Blast hits to 1488 proteins in 87 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 17; Plants - 1446; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 3 No false
    AT3G04180 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04190.1); Has 1490 Blast hits to 1486 proteins in 89 species: Archae - 2; Bacteria - 16; Metazoa - 1; Fungi - 23; Plants - 1436; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 3 No false
    AT3G04190 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04180.1); Has 1477 Blast hits to 1475 proteins in 86 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 23; Plants - 1430; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 3 No false
    AT3G04200 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: stem, male gametophyte, root, leaf; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G05950.1); Has 1512 Blast hits to 1510 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 40; Plants - 1456; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 3 No false
    AT3G05930 ath germin-like protein (GLP8);germin-like protein 8 transcript=eq;prot=eq; + 3 No false
    AT3G05950 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: sperm cell, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04200.1); Has 1545 Blast hits to 1539 proteins in 111 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 32; Plants - 1447; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 3 No false
    AT3G10080 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 3 No false
    AT3G62020 ath germin-like protein (GLP10);germin-like protein 10 transcript=eq;prot=eq; - 3 No false
    AT4G14630 ath germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.;germin-like protein 9 transcript=eq;prot=eq; + 4 No false
    AT5G20630 ath Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.;germin 3 transcript=eq;prot=eq; - 5 No false
    AT5G26700 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 8 (TAIR:AT3G05930.1); Has 2079 Blast hits to 2055 proteins in 228 species: Archae - 2; Bacteria - 206; Metazoa - 4; Fungi - 91; Plants - 1758; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 5 No false
    AT5G38910 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G38940.1); Has 1503 Blast hits to 1497 proteins in 89 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 37; Plants - 1447; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; + 5 No false
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