GO page  


GO term
GO:0032040
Description
small-subunit processome
Type
CC
GO depth
4
Number of genes
139
 

GO distribution

Genes by species
Genes by evidence tag
 
 
Tandem/block/both gene duplicate percentage within this GO term :
This page uses the Flash plugin.

Toolbox


Index of genes with 1 constraints:

GO term parent-child relationships are used in this table.

Page 1 of 7, showing 20 records out of 139 total, starting on record 1, ending on 20

gene_id species description comment go evidence
AL6G08600 aly name=fgenesh1_pg.C_scaffold_6000719;pid=350126;prot=eq;tid=350126 GO:0032040 IEA
AL3G23660 aly name=fgenesh2_kg.3__2374__AT3G21540.1;pid=479673;prot=eq;tid=479673 GO:0032040 IEA
AL6G36790 aly name=fgenesh2_kg.6__3261__AT4G04940.1;pid=490127;prot=eq;tid=490127 GO:0032040 IEA
AL4G31220 aly name=scaffold_403264.1;pid=903763;prot=eq;tid=935276 GO:0032040 IEA
AL5G31000 aly name=fgenesh2_kg.5__2501__AT3G60360.1;pid=486509;prot=eq;tid=486509 GO:0032040 IEA
AL6G39010 aly name=fgenesh2_kg.6__3463__AT4G02400.1;pid=490329;prot=eq;tid=490329 GO:0032040 IEA
AL6G16610 aly name=scaffold_601718.1;pid=909661;prot=eq;tid=941174 GO:0032040 IEA
AT4G02400 ath U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).;U3 ribonucleoprotein (Utp) family protein transcript=eq;prot=eq; GO:0032040 IEA
AT4G04940 ath transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; GO:0032040 IEA
AT5G16750 ath Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.;Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; GO:0032040 IEA
AT3G60360 ath EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).;embryo sac development arrest 14 transcript=eq;prot=eq; GO:0032040 IEA
AT5G08600 ath U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1).;U3 ribonucleoprotein (Utp) family protein transcript=eq;prot=eq; GO:0032040 IEA
BD5G20040 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi5g20040.1;tid=Bradi5g20040.1;GeneName=Bradi5g20040;transcript=eq;prot=eq GO:0032040 IEA
BD1G62850 bdi ATPase activity, coupled (Blast2GO) pid=Bradi1g62850.1;tid=Bradi1g62850.1;GeneName=Bradi1g62850;transcript=eq;prot=eq GO:0032040 IEA
BD5G03100 bdi pid=Bradi5g03100.1;tid=Bradi5g03100.1;GeneName=Bradi5g03100;transcript=eq;prot=eq GO:0032040 IEA
BD1G30580 bdi microtubule-severing ATPase activity (Blast2GO) pid=Bradi1g30580.1;tid=Bradi1g30580.1;GeneName=Bradi1g30580;transcript=eq;prot=eq GO:0032040 IEA
BD2G52910 bdi pid=Bradi2g52910.1;tid=Bradi2g52910.1;GeneName=Bradi2g52910;transcript=eq;prot=eq GO:0032040 IEA
CP00074G00420 cpa name=evm.TU.supercontig_74.42;pid=evm.TU.supercontig_74.42;prot=eq;transcript=eq GO:0032040 IEA
CP00229G00120 cpa name=evm.TU.supercontig_229.12;pid=evm.TU.supercontig_229.12;prot=eq;transcript=eq GO:0032040 IEA
CP00115G00230 cpa name=evm.TU.supercontig_115.23;pid=evm.TU.supercontig_115.23;prot=eq;transcript=eq GO:0032040 IEA
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 next >>

Download genes

Include following columns
gene_id
species
description
comment
go
evidence