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GO term
GO:0016117
Description
carotenoid biosynthetic process
Type
BP
GO depth
4
Number of genes
341
 

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Index of genes with 1 constraints:

GO term parent-child relationships are used in this table.

Page 1 of 18, showing 20 records out of 341 total, starting on record 1, ending on 20

gene_id species description comment go evidence
AL3G04610 aly name=fgenesh2_kg.3__459__AT3G04870.2;pid=477758;prot=eq;tid=477758 GO:0016117 IEA
AL7G30240 aly name=fgenesh2_kg.7__2923__AT4G14210.1;pid=493490;prot=eq;tid=493490 GO:0016117 IEA
AL8G13320 aly name=fgenesh2_kg.8__831__AT5G49555.1;pid=495015;prot=eq;tid=495015 GO:0016117 IEA
AL4G17720 aly name=fgenesh2_kg.4__1248__AT2G32640.2;pid=482188;prot=eq;tid=482188 GO:0016117 IEA
AL8G22670 aly name=scaffold_802265.1;pid=918865;prot=eq;tid=950378 GO:0016117 IEA
AL3G10490 aly name=fgenesh2_kg.3__1049__AT3G10230.1;pid=478348;prot=eq;tid=478348 GO:0016117 IEA
AL1G06350 aly name=fgenesh2_kg.1__658__AT1G06820.1;pid=470704;prot=eq;tid=470704 GO:0016117 IEA
AL1G53720 aly name=fgenesh1_pm.C_scaffold_1003746;pid=314966;prot=eq;tid=314966 GO:0016117 IEA
AT3G10230 ath Encodes a protein with lycopene β-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the ε-cyclase which adds only one ring, the β-cyclase introduces a ring at both ends of lycopene to form the bicyclic β-carotene.;lycopene cyclase transcript=eq;prot=eq; GO:0016117 IEA
AT3G04870 ath Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.;zeta-carotene desaturase transcript=eq;prot=eq; GO:0016117 IEA
AT4G14210 ath Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.;phytoene desaturase 3 transcript=eq;prot=eq; GO:0016117 IDA
AT3G53130 ath Lutein-deficient 1 (LUT1) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Involved in epsilon ring hydroxylation. Maps at 67.3 cM on chromosome 3.;Cytochrome P450 superfamily protein transcript=eq;prot=eq; GO:0016117 IMP
AT2G32640 ath Lycopene beta/epsilon cyclase protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Lycopene beta/epsilon cyclase protein transcript=eq;prot=eq; GO:0016117 IEA
AT1G10670 ath One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.;ATP-citrate lyase A-1 transcript=eq;prot=eq; GO:0016117 IMP
AT2G26170 ath Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3'H, FLS, DFR, ANS, UFGT, RT, AAC and GST).;cytochrome P450, family 711, subfamily A, polypeptide 1 transcript=eq;prot=eq; GO:0016117 TAS
AT3G11945 ath Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate. This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.;homogentisate prenyltransferase transcript=eq;prot=eq; GO:0016117 IMP
AT1G63970 ath Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF;isoprenoid F transcript=eq;prot=eq; GO:0016117 IMP
AT5G17230 ath Encodes phytoene synthase.;PHYTOENE SYNTHASE transcript=eq;prot=eq; GO:0016117 IMP
AT1G06820 ath Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.;carotenoid isomerase transcript=eq;prot=eq; GO:0016117 IGI
AT4G22260 ath Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.;Alternative oxidase family protein transcript=eq;prot=eq; GO:0016117 IMP
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