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GO term
GO:0010214
Description
seed coat development
Type
BP
GO depth
3
Number of genes
220
 

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Index of genes with 1 constraints:

GO term parent-child relationships are used in this table.

Page 1 of 11, showing 20 records out of 220 total, starting on record 1, ending on 20

gene_id species description comment go evidence
AT1G53500 ath encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development.;NAD-dependent epimerase/dehydratase family protein transcript=eq;prot=eq; GO:0010214 IMP
AT5G67360 ath Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.;Subtilase family protein transcript=eq;prot=eq; GO:0010214 IMP
AT5G58230 ath Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; GO:0010214 IMP
AT2G37260 ath Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.Loss of function alleles are associated with a reduction in interploidy lethality.;WRKY family transcription factor family protein transcript=eq;prot=eq; GO:0010214 IMP
AT3G13540 ath Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).;myb domain protein 5 transcript=eq;prot=eq; GO:0010214 IMP
AT1G09540 ath Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.;myb domain protein 61 transcript=eq;prot=eq; GO:0010214 IMP
AT1G63930 ath from the Czech 'roh' meaning 'corner' (ROH1); CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT4G23530.1); Has 150 Blast hits to 147 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 1; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;from the Czech 'roh' meaning 'corner' transcript=eq;prot=eq; GO:0010214 IMP
AT2G21770 ath cellulose synthase, related to CESA6.;cellulose synthase A9 transcript=eq;prot=eq; GO:0010214 IMP
AT3G20210 ath Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.;delta vacuolar processing enzyme transcript=eq;prot=eq; GO:0010214 IMP
AT5G49360 ath Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.;beta-xylosidase 1 transcript=eq;prot=eq; GO:0010214 IMP
AL3G22020 aly name=fgenesh1_pg.C_scaffold_3001926;pid=342163;prot=eq;tid=342163 GO:0010214 ISO
TC06G006030 tca RNAname=Tc06_t006030;GeneName=Tc06_g006030;transcript=eq;prot=eq GO:0010214 ISO
CP00176G00180 cpa name=evm.TU.supercontig_176.18;pid=evm.TU.supercontig_176.18;prot=eq;transcript=eq GO:0010214 ISO
ME05859G00820 mes PACid=17973516;RNAname=cassava4.1_008299m;GeneName=cassava4.1_008299m.g;transcript=ne;prot=eq GO:0010214 ISO
VV16G02240 vvi name=GSVIVG01013978001; transcript=eq;prot=eq;name=GSVIVG01013978001;pid=GSVIVG01013978001;tid=GSVIVT01013978001; GO:0010214 ISO
RC29709G00560 rco name=29709.m001222;gene=29709.t000058;note=29709.t000058;transcript=eq;prot=eq GO:0010214 ISO
ME08265G03860 mes PACid=17989161;RNAname=cassava4.1_008273m;GeneName=cassava4.1_008273m.g;transcript=eq;prot=eq GO:0010214 ISO
GM08G09090 gma 08 pid=16270493;transcript=eq;prot=eq;name=Glyma08g09090.1 GO:0010214 ISO
CP00041G00310 cpa name=evm.TU.supercontig_41.31;pid=evm.TU.supercontig_41.31;prot=eq;transcript=eq GO:0010214 ISO
FV7G21650 fve WD-40 repeat-containing protein MSI1 (similar to) transcript=eq;prot=eq;pid=gene03001 GO:0010214 ISO
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