GO page  


GO term
GO:0009585
Description
red, far-red light phototransduction
Type
BP
GO depth
4
Number of genes
258
 

GO distribution

Genes by species
Genes by evidence tag
 
 
Tandem/block/both gene duplicate percentage within this GO term :
This page uses the Flash plugin.

Toolbox


Index of genes with 1 constraints:

GO term parent-child relationships are used in this table.

Page 1 of 13, showing 20 records out of 258 total, starting on record 1, ending on 20

gene_id species description comment go evidence
AL7G32840 aly name=fgenesh2_kg.7__3070__AT5G35840.1;pid=493637;prot=eq;tid=493637 GO:0009585 IEA
AL7G24700 aly name=scaffold_702622.1;pid=914880;prot=eq;tid=946393 GO:0009585 IEA
AL3G40990 aly name=fgenesh2_kg.3__3552__AT2G18790.1;pid=480851;prot=eq;tid=480851 GO:0009585 IEA
AL1G09260 aly name=fgenesh2_kg.1__1007__AT1G09570.1;pid=471053;prot=eq;tid=471053 GO:0009585 IEA
AL7G27070 aly name=scaffold_702875.1;pid=915133;prot=eq;tid=946646 GO:0009585 IEA
AT1G25540 ath Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense.;phytochrome and flowering time regulatory protein (PFT1) transcript=eq;prot=eq; GO:0009585 IMP
AT2G02950 ath Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.;phytochrome kinase substrate 1 transcript=eq;prot=eq; GO:0009585 IMP
AT4G16250 ath Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo.;phytochrome D transcript=eq;prot=eq; GO:0009585 IEA
AT4G02440 ath EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.;F-box family protein transcript=eq;prot=eq; GO:0009585 IMP
AT4G18130 ath member of Histidine Kinase;phytochrome E transcript=eq;prot=eq; GO:0009585 IEA
AT3G22170 ath A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.;far-red elongated hypocotyls 3 transcript=eq;prot=eq; GO:0009585 IMP
AT5G35840 ath Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.;phytochrome C transcript=eq;prot=eq; GO:0009585 IEA
AT2G26670 ath Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.;Plant haem oxygenase (decyclizing) family protein transcript=eq;prot=eq; GO:0009585 IMP
AT1G09570 ath Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.;phytochrome A transcript=eq;prot=eq; GO:0009585 IEA
AT5G63310 ath Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.;nucleoside diphosphate kinase 2 transcript=eq;prot=eq; GO:0009585 IMP
AT2G18790 ath Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response.;phytochrome B transcript=eq;prot=eq; GO:0009585 IEA
AT2G46340 ath Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.;SPA (suppressor of phyA-105) protein family transcript=eq;prot=eq; GO:0009585 IGI
AT2G46370 ath Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.;Auxin-responsive GH3 family protein transcript=eq;prot=eq; GO:0009585 IMP
AT5G59560 ath Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.;sensitivity to red light reduced protein (SRR1) transcript=eq;prot=eq; GO:0009585 IMP
AT1G02340 ath Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; GO:0009585 TAS
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
go
evidence